Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add singularity.registry = 'quay.io' to pipeline template #2305

Merged
merged 3 commits into from Jun 15, 2023

Conversation

drpatelh
Copy link
Member

@drpatelh drpatelh commented Jun 8, 2023

@drpatelh drpatelh marked this pull request as draft June 8, 2023 10:20
@codecov
Copy link

codecov bot commented Jun 8, 2023

Codecov Report

Merging #2305 (8c96eb4) into dev (3de58f2) will increase coverage by 0.05%.
The diff coverage is n/a.

@@            Coverage Diff             @@
##              dev    #2305      +/-   ##
==========================================
+ Coverage   72.84%   72.90%   +0.05%     
==========================================
  Files          78       78              
  Lines        8750     8761      +11     
==========================================
+ Hits         6374     6387      +13     
+ Misses       2376     2374       -2     
Impacted Files Coverage Δ
nf_core/lint/readme.py 82.14% <ø> (ø)

... and 10 files with indirect coverage changes

Copy link
Contributor

@adamrtalbot adamrtalbot left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

I'm happy with the code but what is the consensus on the Nextflow version? It seems very recent to me.

@@ -226,7 +227,7 @@ manifest {
homePage = 'https://github.com/{{ name }}'
description = """{{ description }}"""
mainScript = 'main.nf'
nextflowVersion = '!>=22.10.1'
nextflowVersion = '!>=23.04.0'
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

How about a compromise of not making it a !>= but instead just a >=?

Copy link
Member Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

This might break if an older version of NF is used in a pipeline that actually requires singularity.registry?

@mirpedrol mirpedrol added this to the 2.9 milestone Jun 12, 2023
@drpatelh drpatelh marked this pull request as ready for review June 13, 2023 18:09
@drpatelh drpatelh merged commit 887e83e into nf-core:dev Jun 15, 2023
15 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

5 participants