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Use INITIALISE subworkflow instead of WorkflowMain.initialise() #2430

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wants to merge 9 commits into from
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Use INITIALISE subworkflow instead of WorkflowMain.initialise() #2430

wants to merge 9 commits into from

Commits on Sep 21, 2023

  1. Pipeline template: Use INIITIALISE subworkflow instead of WorkflowMai… 

    …n.initialise()

Changes:
 - Guts WorkflowMain, particularly the initialise() method
 - Replaces it with INIITIALISE subworkflow

- Should be easier to maintain via nf-core/modules (more regular updates)
- Uses more native Nextflow for bioinformatics developers to follow

Should incidentally fix nf-core#2289
    @adamrtalbot
    adamrtalbot committed Sep 21, 2023
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  2. Template fixes

    @adamrtalbot
    adamrtalbot committed Sep 21, 2023
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  3. Made sure it matches existing template

    @adamrtalbot
    adamrtalbot committed Sep 21, 2023
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  4. fixup

    @adamrtalbot
    adamrtalbot committed Sep 21, 2023
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  5. Update tests to remove INITIALISE subworkflow before testing

    @adamrtalbot
    adamrtalbot committed Sep 21, 2023
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  6. CHANGELOG

    @adamrtalbot
    adamrtalbot committed Sep 21, 2023
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  7. Test for updating modules fixed

    @adamrtalbot
    adamrtalbot committed Sep 21, 2023
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Commits on Sep 22, 2023

  1. initialise-subworkflow-update

    @adamrtalbot
    adamrtalbot committed Sep 22, 2023
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Commits on Sep 25, 2023

  1. Re-add nf-core logo back to template

    @adamrtalbot
    adamrtalbot committed Sep 25, 2023
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