The analysis is based on sequence data from https://onlinelibrary.wiley.com/doi/full/10.1111/mec.13767. The analysis uses 100 randomly sampled loci.
The inferred species trees are plotted in /combined/. Arrows are shown for gene flow supported with a Bayes Factor of more than 10. Each log file corresponds to one species tree with a unique ranked tree topology. The different lenghts of the log files are due to different support for these species trees. For the figures, we only used the 4 best supported trees, i.e. tree files 1 to 4.
Neo_densi.pdf shows the inferred distribution of trees