LINE 1 sequences analysis for PLoS Genetics paper by Anthony Furano's lab, NIDDK, NIH
Using conda (from Anaconda Python), set up an environment (py27a) with the environment.yml file provided. Then run (in the py27a env)
python furano_v5.py
in a directory with all the fasta files provided. A pdf will be produced. You can change the viewing angle shown in the pdf by altering the angles in the script to your liking.