-
Notifications
You must be signed in to change notification settings - Fork 294
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
ENH: Stop NeuroDebian dependency in Dockerfile #2578
Conversation
9e54756
to
2d3f4dc
Compare
either through conda or direct download
2d3f4dc
to
0953038
Compare
Dockerfile
Outdated
mkl-service \ | ||
mkl \ |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
The point of pinning these was to reduce the scope of rebuilds to inadvertently introduce sources of numeric variation. Has that changed?
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Has that changed?
Not really. We can still pin some specific versions after being able to build - but pinning with conda is not precisely smooth. I'm not against reintroducing pins on all dependencies.
Dockerfile
Outdated
# ABI tags can interfere when running on Singularity | ||
RUN strip --remove-section=.note.ABI-tag /usr/lib/x86_64-linux-gnu/libQt5Core.so.5 | ||
# RUN strip --remove-section=.note.ABI-tag /usr/lib/x86_64-linux-gnu/libQt5Core.so.5 |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Before we merge with this removed, let's push a docker/
branch and ask a user who was experiencing the problem (#2534) to verify that it doesn't return.
To my knowledge, affected users include @sameera2004 and @jbwexler.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Yup. Alternatively, I can try to locate Qt5 (now installed by conda) and remove the tag anyways.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Well, pushing a docker/
branch will make either task easier.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I'll merge now to allow other PRs be executed. The ABI tag stripping has been restored, so it should not be an issue anymore. |
Codecov Report
@@ Coverage Diff @@
## master #2578 +/- ##
=======================================
Coverage 45.33% 45.33%
=======================================
Files 41 41
Lines 3121 3121
=======================================
Hits 1415 1415
Misses 1706 1706
Continue to review full report at Codecov.
|
either through conda or direct download
Changes proposed in this pull request
Documentation that should be reviewed