Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Choose Head Size Based off of age of Participant #198

Open
audreymhoughton opened this issue Mar 25, 2022 · 3 comments
Open

Choose Head Size Based off of age of Participant #198

audreymhoughton opened this issue Mar 25, 2022 · 3 comments
Labels
enhancement New feature or request

Comments

@audreymhoughton
Copy link

A short summary of what you would like to see in NiBabies.

Scale brain size flag based off of the age of the participant. Will need to find or make a table for the best brain size for each age.

Do you have any interest in helping implement the feature?

Yes, but I would need guidance

Add any additional information or context about the request here.

I think we should be able to help find / make a table. We should have a resource we can use through the BCP data. I don't have the bandwidth to help add into the code itself though.

@audreymhoughton audreymhoughton added the enhancement New feature or request label Mar 25, 2022
@tsalo
Copy link
Contributor

tsalo commented Feb 12, 2024

What about calculating the head size from the anatomical image, as we do in XCP-D?

@mgxd
Copy link
Collaborator

mgxd commented Feb 13, 2024

@tsalo are you referring to this function? Looks interesting and reasonable to add

@tsalo
Copy link
Contributor

tsalo commented Feb 13, 2024

Absolutely! There are probably better ways to do it than assuming the brain is a sphere, but that function seems to work fairly well (not that I've done rigorous testing).

effigies added a commit to nipreps/fmriprep that referenced this issue Mar 4, 2024
Closes #3231.

## Changes proposed in this pull request

- Add metadata, including Units, for motion parameters (6 basic
parameters and FD).
- I included FD because it might be good to log the head radius that is
used to calculate it at some point (e.g., if
nipreps/nibabies#198 moves forward)

## Documentation that should be reviewed

none

---------

Co-authored-by: Chris Markiewicz <effigies@gmail.com>
@mgxd mgxd reopened this Apr 10, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

3 participants