Missing subject-level folders

[danlurie]

Suspect this issue may be related to #76, but I can't figure out what locate is so I'm not sure. Anyway...

I call heudiconv with:

heudiconv \
-d /home/despoB/DistractWM/RawData/Distractwm_{subject}/Despo_Lab_Anastasia*/*/*.dcm \
-s 102 103 
-c dcm2niix \
-o /home/despoB/DistractWM/BIDS/test \
-f /home/despoB/dlurie/Software/heudiconv/heuristics/uc_bids_DistractWM.py \
-b \
--minmeta

Heuristic can be found here if that's useful. heudiconv successfully converts the DICOMs, names the files correctly, and creates the JSON sidecars, but puts files from all subjects in the same two output/anat and output/func directories. That is to say, no sub-102 or sub-103 directories are created.

I'm running the latest heudiconv cloned from Github earlier today.

Any ideas of what I might do to fix this are greatly appreciated!

[satra]

this is an intentional regression. previously heudiconv would take the sub id 102 for example and create a folder in the output and then to make it bids conformant people would have to rename it.

since the bids component of the information comes from the heuristic, the heuristic needs to be updated to reflect it. so in your case updating the templates inside the heuristic to be sub-{subject}/... should do the job.

[danlurie]

Thanks! That solves it.