GitHub - nishuai/R_seq: R scripts for NGS data analysis

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Name		Name	Last commit message	Last commit date
Latest commit History 44 Commits
DiffeCLIP		DiffeCLIP
MRcutoff_ctdna_SNP		MRcutoff_ctdna_SNP
NearestPeaks		NearestPeaks
README		README
R_gtf_formater		R_gtf_formater
SNP_compare		SNP_compare
bed_overlaps		bed_overlaps
codon_usage_from_seq		codon_usage_from_seq
feature_training.R		feature_training.R
goseq_for_cuffdiff		goseq_for_cuffdiff
mean_coverage_in_bed		mean_coverage_in_bed
mutation_SNP_cutoff_training.R		mutation_SNP_cutoff_training.R
revise_bed.R		revise_bed.R

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This repository contains all the R codes used during NGS data analysis and statistical data analysis, e.g. SNP calling, graphics and enrichment analysis...