Allelic Variant Explorer demo

The Allelic Variation Explorer (AVE) is a web application to visualize (clustered) single-nucleotide variants across genomes. This demo includes a sample dataset of genomic variants in tomato genomes (reference: Solanum lycopersicum str. Heinz 1706, SL2.40 genome build, only 100kbp of chr. 6).

Dataset

The data/ directory contains the input files as described in more details here.

Run

docker run -d -p 8080:80 ave2/ave-demo

The application will be available on http://<hostname>:8080

Build (optional)

docker build -t ave2/ave-demo .