Addresses #2124 Obsolete 'native cell' and 'animal cell'

[ghost]

Addresses #2124 Obsolete 'native cell' and 'animal cell'

[ghost]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2023-09-12/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2023-09-12/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

BEST4+ intestinal epithelial cell, human http://purl.obolibrary.org/obo/CL_4030026

Removed

• BEST4+ intestinal epithelial cell, human SubClassOf animal cell

Added

• BEST4+ intestinal epithelial cell, human SubClassOf eukaryotic cell

CD25+ mast cell http://purl.obolibrary.org/obo/CL_0011023

Removed

• CD25+ mast cell SubClassOf animal cell

His-Purkinje system cell http://purl.obolibrary.org/obo/CL_0010007

Removed

• His-Purkinje system cell SubClassOf animal cell

Added

• His-Purkinje system cell SubClassOf cell

Leydig cell http://purl.obolibrary.org/obo/CL_0000178

Removed

• Leydig cell SubClassOf animal cell

Malpighian tubule stellate cell http://purl.obolibrary.org/obo/CL_1000155

Removed

• Malpighian tubule stellate cell SubClassOf animal cell

absorptive cell http://purl.obolibrary.org/obo/CL_0000212

Removed

• absorptive cell SubClassOf native cell

Added

• absorptive cell SubClassOf cell

adepithelial cell http://purl.obolibrary.org/obo/CL_0000462

Added

• adepithelial cell SubClassOf eukaryotic cell

alarm substance cell http://purl.obolibrary.org/obo/CL_0007021

Removed

• alarm substance cell SubClassOf animal cell

amoeboid cell http://purl.obolibrary.org/obo/CL_0000732

Removed

• amoeboid cell SubClassOf animal cell

animal cell http://purl.obolibrary.org/obo/CL_0000548

Removed

• animal cell label "animal cell"

• animal cell definition "A native cell that is part of some Metazoa."

• animal cell SubClassOf eukaryotic cell

Added

• animal cell label "obsolete animal cell"

• animal cell definition "OBSOLETE. A native cell that is part of some Metazoa."

• animal cell deprecated true

• animal cell term replaced by cell

• animal cell comment "obsolete native cell and animal cell, they are confusing and cause missing inferences #2124"

animal zygote http://purl.obolibrary.org/obo/CL_0000365

Added

• animal zygote SubClassOf eukaryotic cell

anucleate cell http://purl.obolibrary.org/obo/CL_0000225

Removed

• anucleate cell SubClassOf native cell

Added

• anucleate cell SubClassOf cell

apoptosis fated cell http://purl.obolibrary.org/obo/CL_0000445

Removed

• apoptosis fated cell SubClassOf native cell

Added

• apoptosis fated cell SubClassOf cell

barrier cell http://purl.obolibrary.org/obo/CL_0000215

Removed

• barrier cell SubClassOf native cell

Added

• barrier cell SubClassOf cell

bone cell http://purl.obolibrary.org/obo/CL_0001035

Removed

• bone cell SubClassOf animal cell
  • is_inferred "true"

Added

• bone cell SubClassOf cell

brain vascular cell http://purl.obolibrary.org/obo/CL_4023072

Removed

• brain vascular cell SubClassOf native cell

Added

• brain vascular cell SubClassOf neural cell

cap cell http://purl.obolibrary.org/obo/CL_0000676

Removed

• cap cell SubClassOf animal cell

cardiac septum cell http://purl.obolibrary.org/obo/CL_2000022

Removed

• cardiac septum cell SubClassOf animal cell

Added

• cardiac septum cell SubClassOf cell

cardiac valve cell http://purl.obolibrary.org/obo/CL_1000147

Removed

• cardiac valve cell SubClassOf animal cell

Added

• cardiac valve cell SubClassOf cell

cardioblast (sensu Arthropoda) http://purl.obolibrary.org/obo/CL_0000465

Added

• cardioblast (sensu Arthropoda) SubClassOf eukaryotic cell

choroidal cell of the eye http://purl.obolibrary.org/obo/CL_0000348

Removed

• choroidal cell of the eye SubClassOf animal cell

ciliated cell http://purl.obolibrary.org/obo/CL_0000064

Removed

• ciliated cell SubClassOf native cell

Added

• ciliated cell SubClassOf cell

circulating cell http://purl.obolibrary.org/obo/CL_0000080

Removed

• circulating cell SubClassOf native cell

Added

• circulating cell SubClassOf cell

cnidocyte http://purl.obolibrary.org/obo/CL_0011029

Removed

• cnidocyte SubClassOf animal cell

collar cell http://purl.obolibrary.org/obo/CL_0010016

Removed

• collar cell SubClassOf animal cell

contractile cell http://purl.obolibrary.org/obo/CL_0000183

Removed

• contractile cell SubClassOf native cell

Added

• contractile cell SubClassOf cell

corneocyte http://purl.obolibrary.org/obo/CL_0002153

Removed

• corneocyte SubClassOf animal cell

cyanoblast http://purl.obolibrary.org/obo/CL_0005005

Removed

• cyanoblast SubClassOf animal cell

cyanophore http://purl.obolibrary.org/obo/CL_0000747

Removed

• cyanophore SubClassOf animal cell

cystoblast http://purl.obolibrary.org/obo/CL_0000722

Removed

• cystoblast SubClassOf animal cell

Added

• cystoblast SubClassOf eukaryotic cell

defensive cell http://purl.obolibrary.org/obo/CL_0000473

Removed

• defensive cell SubClassOf native cell

Added

• defensive cell SubClassOf cell

diploid cell http://purl.obolibrary.org/obo/CL_0000415

Removed

• diploid cell SubClassOf native cell

Added

• diploid cell SubClassOf cell

distal tip cell (sensu Nematoda) http://purl.obolibrary.org/obo/CL_0000661

Removed

• distal tip cell (sensu Nematoda) SubClassOf animal cell

egg cell http://purl.obolibrary.org/obo/CL_0000025

Removed

• egg cell SubClassOf animal cell

electrically active cell http://purl.obolibrary.org/obo/CL_0000211

Removed

• electrically active cell SubClassOf native cell

Added

• electrically active cell SubClassOf cell

embryonic cell (metazoa) http://purl.obolibrary.org/obo/CL_0002321

Removed

• embryonic cell (metazoa) SubClassOf animal cell

Added

• embryonic cell (metazoa) SubClassOf cell

endocrine cell http://purl.obolibrary.org/obo/CL_0000163

Removed

• endocrine cell SubClassOf animal cell

epidermal cell (sensu Arthropoda) http://purl.obolibrary.org/obo/CL_0000463

Added

• epidermal cell (sensu Arthropoda) SubClassOf eukaryotic cell

epithelial cell http://purl.obolibrary.org/obo/CL_0000066

Removed

• epithelial cell SubClassOf animal cell

Added

• epithelial cell SubClassOf cell

erythrophore http://purl.obolibrary.org/obo/CL_0000574

Removed

• erythrophore SubClassOf animal cell

eukaryotic cell http://purl.obolibrary.org/obo/CL_0000255

Removed

• eukaryotic cell SubClassOf native cell

Added

• eukaryotic cell SubClassOf cell

exocrine cell http://purl.obolibrary.org/obo/CL_0000152

Removed

• exocrine cell SubClassOf animal cell

fat body cell http://purl.obolibrary.org/obo/CL_0000565

Removed

• fat body cell SubClassOf animal cell

fetal hepatobiliary progenitor cell http://purl.obolibrary.org/obo/CL_0009013

Removed

• fetal hepatobiliary progenitor cell SubClassOf animal cell

flask cell http://purl.obolibrary.org/obo/CL_0007023

Removed

• flask cell SubClassOf animal cell

Added

• flask cell SubClassOf cell

foam cell http://purl.obolibrary.org/obo/CL_0000891

Removed

• foam cell SubClassOf native cell

Added

• foam cell SubClassOf cell

follicle cell of egg chamber http://purl.obolibrary.org/obo/CL_0000477

Added

• follicle cell of egg chamber SubClassOf eukaryotic cell

follicle stem cell (sensu Arthropoda) http://purl.obolibrary.org/obo/CL_0000441

Added

• follicle stem cell (sensu Arthropoda) SubClassOf eukaryotic cell

follicular dendritic cell http://purl.obolibrary.org/obo/CL_0000442

Removed

• follicular dendritic cell SubClassOf animal cell

fungal cell http://purl.obolibrary.org/obo/CL_0000521

Removed

• fungal cell DisjointWith animal cell

gamete-nursing cell http://purl.obolibrary.org/obo/CL_4029001

Removed

• gamete-nursing cell SubClassOf native cell

Added

• gamete-nursing cell SubClassOf cell

germ line cell http://purl.obolibrary.org/obo/CL_0000039

Removed

• germ line cell SubClassOf native cell

Added

• germ line cell SubClassOf cell

germ line stem cell http://purl.obolibrary.org/obo/CL_0000014

Removed

• germ line stem cell SubClassOf germ line cell
  • is_inferred "true"

Added

• germ line stem cell SubClassOf germ line cell

germline-derived nurse cell http://purl.obolibrary.org/obo/CL_4029002

Removed

• germline-derived nurse cell SubClassOf animal cell

glioblast http://purl.obolibrary.org/obo/CL_0000030

Removed

• glioblast SubClassOf animal cell

gut absorptive cell http://purl.obolibrary.org/obo/CL_0000677

Removed

• gut absorptive cell SubClassOf absorptive cell

Added

• gut absorptive cell SubClassOf cell

haploid cell http://purl.obolibrary.org/obo/CL_0000413

Removed

• haploid cell SubClassOf native cell

Added

• haploid cell SubClassOf cell

hatching gland cell http://purl.obolibrary.org/obo/CL_0000249

Removed

• hatching gland cell SubClassOf animal cell

hemocyte (sensu Arthropoda) http://purl.obolibrary.org/obo/CL_0000387

Added

• hemocyte (sensu Arthropoda) SubClassOf eukaryotic cell

hepatic oval stem cell http://purl.obolibrary.org/obo/CL_0002196

Removed

• hepatic oval stem cell SubClassOf animal cell

histoblast http://purl.obolibrary.org/obo/CL_0000373

Removed

• histoblast SubClassOf animal cell

Added

• histoblast SubClassOf eukaryotic cell

imaginal disc cell http://purl.obolibrary.org/obo/CL_0000429

Added

• imaginal disc cell SubClassOf eukaryotic cell

inner cell mass cell http://purl.obolibrary.org/obo/CL_2000020

Removed

• inner cell mass cell SubClassOf native cell

Added

• inner cell mass cell SubClassOf cell

interstitial cell http://purl.obolibrary.org/obo/CL_4030031

Removed

• interstitial cell SubClassOf native cell

Added

• interstitial cell SubClassOf cell

iridoblast http://purl.obolibrary.org/obo/CL_0005001

Removed

• iridoblast SubClassOf animal cell

iridophore http://purl.obolibrary.org/obo/CL_0000431

Removed

• iridophore SubClassOf animal cell

labyrinth supporting cell http://purl.obolibrary.org/obo/CL_0000631

Removed

• labyrinth supporting cell SubClassOf animal cell

leucoblast http://purl.obolibrary.org/obo/CL_0005003

Removed

• leucoblast SubClassOf animal cell

leucophore http://purl.obolibrary.org/obo/CL_0000571

Removed

• leucophore SubClassOf animal cell

leukocyte http://purl.obolibrary.org/obo/CL_0000738

Added

• leukocyte SubClassOf eukaryotic cell

ligament cell http://purl.obolibrary.org/obo/CL_0000384

Removed

• ligament cell SubClassOf animal cell

lower urinary tract cell http://purl.obolibrary.org/obo/CL_1000600

Removed

• lower urinary tract cell SubClassOf animal cell
  • is_inferred "true"

Added

• lower urinary tract cell SubClassOf cell

lung ciliated cell http://purl.obolibrary.org/obo/CL_1000271

Removed

• lung ciliated cell SubClassOf animal cell

lung secretory cell http://purl.obolibrary.org/obo/CL_1000272

Removed

• lung secretory cell SubClassOf animal cell

male gamete http://purl.obolibrary.org/obo/CL_0000408

Removed

• male gamete SubClassOf animal cell

micropylar cell http://purl.obolibrary.org/obo/CL_0007022

Removed

• micropylar cell SubClassOf animal cell

Added

• micropylar cell SubClassOf cell

mitogenic signaling cell http://purl.obolibrary.org/obo/CL_0000422

Removed

• mitogenic signaling cell SubClassOf native cell

Added

• mitogenic signaling cell SubClassOf cell

motile cell http://purl.obolibrary.org/obo/CL_0000219

Removed

• motile cell SubClassOf native cell

Added

• motile cell SubClassOf cell

native cell http://purl.obolibrary.org/obo/CL_0000003

Removed

• native cell label "native cell"

• native cell comment "To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12)."

• native cell definition "A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment)."

  • database_cross_reference "CARO:mah"

• native cell SubClassOf cell

Added

• native cell term replaced by cell

• native cell deprecated true

• native cell comment "obsolete native cell and animal cell, they are confusing and cause missing inferences #2124"

• native cell definition "OBSOLETE. A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment)."

  • database_cross_reference "CARO:mah"

• native cell label "obsolete native cell"

nephrocyte http://purl.obolibrary.org/obo/CL_0002520

Removed

• nephrocyte SubClassOf animal cell

Added

• nephrocyte SubClassOf eukaryotic cell

neural progenitor cell http://purl.obolibrary.org/obo/CL_0011020

Removed

• neural progenitor cell SubClassOf animal cell

neuroblast (sensu Nematoda and Protostomia) http://purl.obolibrary.org/obo/CL_0000338

Added

• neuroblast (sensu Nematoda and Protostomia) SubClassOf eukaryotic cell

neuroblast (sensu Vertebrata) http://purl.obolibrary.org/obo/CL_0000031

Removed

• neuroblast (sensu Vertebrata) SubClassOf animal cell

Added

• neuroblast (sensu Vertebrata) SubClassOf eukaryotic cell

neuroglioblast (sensu Nematoda and Protostomia) http://purl.obolibrary.org/obo/CL_0000468

Added

• neuroglioblast (sensu Nematoda and Protostomia) SubClassOf eukaryotic cell

neuromast mantle cell http://purl.obolibrary.org/obo/CL_0000851

Removed

• neuromast mantle cell SubClassOf animal cell

neuron associated cell (sensu Nematoda and Protostomia) http://purl.obolibrary.org/obo/CL_0000130

Added

• neuron associated cell (sensu Nematoda and Protostomia) SubClassOf eukaryotic cell

neuron associated cell (sensu Vertebrata) http://purl.obolibrary.org/obo/CL_0000123

Added

• neuron associated cell (sensu Vertebrata) SubClassOf eukaryotic cell

nitrogen fixing cell http://purl.obolibrary.org/obo/CL_0000725

Removed

• nitrogen fixing cell SubClassOf native cell

Added

• nitrogen fixing cell SubClassOf cell

notochordal cell http://purl.obolibrary.org/obo/CL_0007005

Removed

• notochordal cell SubClassOf animal cell

Added

• notochordal cell SubClassOf cell

nucleate cell http://purl.obolibrary.org/obo/CL_0002242

Removed

• nucleate cell SubClassOf native cell

Added

• nucleate cell SubClassOf cell

oenocyte http://purl.obolibrary.org/obo/CL_0000487

Removed

• oenocyte SubClassOf animal cell

Added

• oenocyte SubClassOf eukaryotic cell

oocyte http://purl.obolibrary.org/obo/CL_0000023

Removed

• oocyte SubClassOf animal cell

Added

• oocyte SubClassOf eukaryotic cell

oogonial cell http://purl.obolibrary.org/obo/CL_0000024

Removed

• oogonial cell SubClassOf animal cell

oxygen accumulating cell http://purl.obolibrary.org/obo/CL_0000329

Removed

• oxygen accumulating cell SubClassOf native cell

Added

• oxygen accumulating cell SubClassOf cell

paracrine cell http://purl.obolibrary.org/obo/CL_0000512

Removed

• paracrine cell SubClassOf animal cell

paraganglia type 2 cell http://purl.obolibrary.org/obo/CL_0000701

Removed

• paraganglia type 2 cell SubClassOf animal cell

perivascular cell http://purl.obolibrary.org/obo/CL_4033054

Removed

• perivascular cell SubClassOf native cell

Added

• perivascular cell SubClassOf cell

phagocyte http://purl.obolibrary.org/obo/CL_0000234

Removed

• phagocyte SubClassOf animal cell

phagocyte (sensu Vertebrata) http://purl.obolibrary.org/obo/CL_0000518

Added

• phagocyte (sensu Vertebrata) SubClassOf eukaryotic cell

photosynthetic cell http://purl.obolibrary.org/obo/CL_0000628

Removed

• photosynthetic cell SubClassOf native cell

Added

• photosynthetic cell SubClassOf cell

pigment cell (sensu Nematoda and Protostomia) http://purl.obolibrary.org/obo/CL_0000341

Removed

• pigment cell (sensu Nematoda and Protostomia) SubClassOf animal cell

pigment cell (sensu Vertebrata) http://purl.obolibrary.org/obo/CL_0000342

Removed

• pigment cell (sensu Vertebrata) SubClassOf animal cell

Added

• pigment cell (sensu Vertebrata) SubClassOf eukaryotic cell

pigment erythroblast http://purl.obolibrary.org/obo/CL_0005004

Removed

• pigment erythroblast SubClassOf animal cell

polar body http://purl.obolibrary.org/obo/CL_0002090

Removed

• polar body SubClassOf animal cell

polyploid cell http://purl.obolibrary.org/obo/CL_0000412

Removed

• polyploid cell SubClassOf native cell

Added

• polyploid cell SubClassOf cell

posterior lateral line neuromast supporting cell http://purl.obolibrary.org/obo/CL_2000039

Removed

• posterior lateral line neuromast supporting cell SubClassOf animal cell

preameloblast http://purl.obolibrary.org/obo/CL_0007000

Removed

• preameloblast SubClassOf animal cell

precementoblast http://purl.obolibrary.org/obo/CL_0007002

Removed

• precementoblast SubClassOf animal cell

prechondroblast http://purl.obolibrary.org/obo/CL_0007009

Removed

• prechondroblast SubClassOf animal cell

precursor cell http://purl.obolibrary.org/obo/CL_0011115

Removed

• precursor cell SubClassOf native cell

Added

• precursor cell SubClassOf cell

preodontoblast http://purl.obolibrary.org/obo/CL_0007003

Removed

• preodontoblast SubClassOf animal cell

primary neuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000530

Added

• primary neuron (sensu Teleostei) SubClassOf eukaryotic cell

primary spermatocyte http://purl.obolibrary.org/obo/CL_0000656

Removed

• primary spermatocyte SubClassOf spermatocyte
  • is_inferred "true"

Added

• primary spermatocyte SubClassOf spermatocyte

primordial germ cell http://purl.obolibrary.org/obo/CL_0000670

Removed

• primordial germ cell SubClassOf animal cell

progenitor cell of endocrine pancreas http://purl.obolibrary.org/obo/CL_0002351

Removed

• progenitor cell of endocrine pancreas SubClassOf animal cell

progenitor cell of mammary luminal epithelium http://purl.obolibrary.org/obo/CL_0009116

Removed

• progenitor cell of mammary luminal epithelium SubClassOf animal cell

prokaryotic cell http://purl.obolibrary.org/obo/CL_0000520

Removed

• prokaryotic cell SubClassOf native cell

Added

• prokaryotic cell SubClassOf cell

retinal melanocyte http://purl.obolibrary.org/obo/CL_0002485

Removed

• retinal melanocyte SubClassOf melanocyte
  • is_inferred "true"

Added

• retinal melanocyte SubClassOf melanocyte

rod bipolar cell http://purl.obolibrary.org/obo/CL_0000751

Added

• rod bipolar cell SubClassOf eukaryotic cell

rosehip neuron http://purl.obolibrary.org/obo/CL_0008032

Added

• rosehip neuron SubClassOf eukaryotic cell

scleral cell http://purl.obolibrary.org/obo/CL_0000347

Removed

• scleral cell SubClassOf animal cell

scolopale cell http://purl.obolibrary.org/obo/CL_0000382

Removed

• scolopale cell SubClassOf animal cell

scolopidial ligament cell http://purl.obolibrary.org/obo/CL_0000407

Removed

• scolopidial ligament cell SubClassOf animal cell

sebaceous gland cell http://purl.obolibrary.org/obo/CL_2000021

Removed

• sebaceous gland cell SubClassOf animal cell

Added

• sebaceous gland cell SubClassOf cell

secondary neuron (sensu Teleostei) http://purl.obolibrary.org/obo/CL_0000535

Added

• secondary neuron (sensu Teleostei) SubClassOf eukaryotic cell

secondary spermatocyte http://purl.obolibrary.org/obo/CL_0000657

Removed

• secondary spermatocyte SubClassOf spermatocyte
  • is_inferred "true"

Added

• secondary spermatocyte SubClassOf spermatocyte

secretory cell http://purl.obolibrary.org/obo/CL_0000151

Removed

• secretory cell SubClassOf native cell

Added

• secretory cell SubClassOf cell

sensory receptor cell http://purl.obolibrary.org/obo/CL_0000197

Removed

• sensory receptor cell SubClassOf native cell

Added

• sensory receptor cell SubClassOf cell

sheath cell (sensu Nematoda) http://purl.obolibrary.org/obo/CL_0000367

Removed

• sheath cell (sensu Nematoda) SubClassOf animal cell

skeletal muscle myoblast http://purl.obolibrary.org/obo/CL_0000515

Removed

• skeletal muscle myoblast SubClassOf myoblast
  • is_inferred "true"

Added

• skeletal muscle myoblast SubClassOf myoblast

skeletogenic cell http://purl.obolibrary.org/obo/CL_0007001

Removed

• skeletogenic cell SubClassOf native cell

Added

• skeletogenic cell SubClassOf cell

smooth muscle myoblast http://purl.obolibrary.org/obo/CL_0000514

Removed

• smooth muscle myoblast SubClassOf myoblast
  • is_inferred "true"

Added

• smooth muscle myoblast SubClassOf myoblast

somatic cell http://purl.obolibrary.org/obo/CL_0002371

Removed

• somatic cell SubClassOf animal cell

Added

• somatic cell SubClassOf cell

spermatid http://purl.obolibrary.org/obo/CL_0000018

Removed

• spermatid SubClassOf male germ cell

  • is_inferred "true"

• spermatid SubClassOf animal cell

Added

• spermatid SubClassOf male germ cell

spermatocyte http://purl.obolibrary.org/obo/CL_0000017

Removed

• spermatocyte SubClassOf animal cell

• spermatocyte SubClassOf male germ cell

  • is_inferred "true"

Added

• spermatocyte SubClassOf male germ cell

spermatogonium http://purl.obolibrary.org/obo/CL_0000020

Removed

• spermatogonium SubClassOf animal cell

stem cell http://purl.obolibrary.org/obo/CL_0000034

Removed

• stem cell SubClassOf animal cell

structural cell http://purl.obolibrary.org/obo/CL_0000293

Removed

• structural cell SubClassOf native cell

Added

• structural cell SubClassOf cell

stuff accumulating cell http://purl.obolibrary.org/obo/CL_0000325

Removed

• stuff accumulating cell SubClassOf native cell

Added

• stuff accumulating cell SubClassOf cell

supporting cell http://purl.obolibrary.org/obo/CL_0000630

Removed

• supporting cell SubClassOf native cell

Added

• supporting cell SubClassOf cell

thecogen cell http://purl.obolibrary.org/obo/CL_0000380

Removed

• thecogen cell SubClassOf animal cell

tip cell http://purl.obolibrary.org/obo/CL_0000423

Removed

• tip cell SubClassOf animal cell

tracheobronchial serous cell http://purl.obolibrary.org/obo/CL_0019001

Removed

• tracheobronchial serous cell SubClassOf animal cell

transit amplifying cell http://purl.obolibrary.org/obo/CL_0009010

Removed

• transit amplifying cell SubClassOf native cell

Added

• transit amplifying cell SubClassOf cell

transit amplifying cell of anorectum http://purl.obolibrary.org/obo/CL_0009056

Removed

• transit amplifying cell of anorectum SubClassOf animal cell

transit amplifying cell of appendix http://purl.obolibrary.org/obo/CL_0009027

Removed

• transit amplifying cell of appendix SubClassOf animal cell

transit amplifying cell of colon http://purl.obolibrary.org/obo/CL_0009011

Removed

• transit amplifying cell of colon SubClassOf animal cell

transit amplifying cell of small intestine http://purl.obolibrary.org/obo/CL_0009012

Removed

• transit amplifying cell of small intestine SubClassOf animal cell

transporting cell http://purl.obolibrary.org/obo/CL_0000627

Removed

• transporting cell SubClassOf native cell

Added

• transporting cell SubClassOf cell

ureteral cell http://purl.obolibrary.org/obo/CL_1000601

Removed

• ureteral cell SubClassOf animal cell
  • is_inferred "true"

Added

• ureteral cell SubClassOf cell

visual pigment cell http://purl.obolibrary.org/obo/CL_0000149

Removed

• visual pigment cell SubClassOf animal cell

xanthoblast http://purl.obolibrary.org/obo/CL_0005002

Removed

• xanthoblast SubClassOf animal cell

zygote http://purl.obolibrary.org/obo/CL_0010017

Removed

• zygote SubClassOf native cell

Added

• zygote SubClassOf cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

CD25+ mast cell http://purl.obolibrary.org/obo/CL_0011023

Removed

• CD25+ mast cell SubClassOf animal cell

Eumycetozoan cell http://purl.obolibrary.org/obo/CL_0000257

Removed

• Eumycetozoan cell EquivalentTo native cell and (only in taxon some Eumycetozoa)

Added

• Eumycetozoan cell EquivalentTo cell and (only in taxon some Eumycetozoa)

His-Purkinje system cell http://purl.obolibrary.org/obo/CL_0010007

Removed

• His-Purkinje system cell EquivalentTo native cell and (part_of some His-Purkinje system)

• His-Purkinje system cell SubClassOf animal cell

Added

• His-Purkinje system cell EquivalentTo cell and (part_of some His-Purkinje system)

Leydig cell http://purl.obolibrary.org/obo/CL_0000178

Removed

• Leydig cell SubClassOf animal cell

Malpighian tubule stellate cell http://purl.obolibrary.org/obo/CL_1000155

Removed

• Malpighian tubule stellate cell SubClassOf animal cell

Peyer's patch follicular dendritic cell http://purl.obolibrary.org/obo/CL_0009015

Removed

• Peyer's patch follicular dendritic cell SubClassOf animal cell

Schwann cell precursor http://purl.obolibrary.org/obo/CL_0002375

Removed

• Schwann cell precursor SubClassOf animal cell

X chromosome-bearing sperm cell http://purl.obolibrary.org/obo/CL_0002291

Removed

• X chromosome-bearing sperm cell SubClassOf animal cell

Y chromosome-bearing sperm cell http://purl.obolibrary.org/obo/CL_0002290

Removed

• Y chromosome-bearing sperm cell SubClassOf animal cell

absorptive cell http://purl.obolibrary.org/obo/CL_0000212

Removed

• absorptive cell SubClassOf native cell

Added

• absorptive cell SubClassOf cell

activated skeletal muscle satellite cell http://purl.obolibrary.org/obo/CL_0008016

Removed

• activated skeletal muscle satellite cell SubClassOf animal cell

adaxial cell http://purl.obolibrary.org/obo/CL_0007016

Removed

• adaxial cell SubClassOf animal cell

adepithelial cell http://purl.obolibrary.org/obo/CL_0000462

Removed

• adepithelial cell SubClassOf animal cell

adult skeletal muscle myoblast http://purl.obolibrary.org/obo/CL_0008017

Removed

• adult skeletal muscle myoblast SubClassOf animal cell

alarm substance cell http://purl.obolibrary.org/obo/CL_0007021

Removed

• alarm substance cell SubClassOf animal cell

amoeboid cell http://purl.obolibrary.org/obo/CL_0000732

Removed

• amoeboid cell SubClassOf animal cell

amoeboid sperm cell http://purl.obolibrary.org/obo/CL_0011015

Removed

• amoeboid sperm cell SubClassOf animal cell

animal cell http://purl.obolibrary.org/obo/CL_0000548

Removed

• animal cell label "animal cell"

• animal cell definition "A native cell that is part of some Metazoa."

• animal cell EquivalentTo native cell and (only in taxon some Metazoa)

• animal cell SubClassOf only in taxon some Metazoa

• animal cell SubClassOf eukaryotic cell

Added

• animal cell label "obsolete animal cell"

• animal cell definition "OBSOLETE. A native cell that is part of some Metazoa."

• animal cell deprecated true

• animal cell term replaced by cell

• animal cell comment "obsolete native cell and animal cell, they are confusing and cause missing inferences #2124"

anterior cone cell (sensu Endopterygota) http://purl.obolibrary.org/obo/CL_0000720

Removed

• anterior cone cell (sensu Endopterygota) SubClassOf animal cell

anterior lateral line neuromast mantle cell http://purl.obolibrary.org/obo/CL_2000035

Removed

• anterior lateral line neuromast mantle cell SubClassOf animal cell

anucleate cell http://purl.obolibrary.org/obo/CL_0000225

Removed

• anucleate cell EquivalentTo native cell and (bearer of some anucleate)

Added

• anucleate cell EquivalentTo cell and (bearer of some anucleate)

apocrine cell http://purl.obolibrary.org/obo/CL_0000033

Removed

• apocrine cell SubClassOf animal cell

apoptosis fated cell http://purl.obolibrary.org/obo/CL_0000445

Removed

• apoptosis fated cell SubClassOf native cell

Added

• apoptosis fated cell SubClassOf cell

atrioventricular bundle cell http://purl.obolibrary.org/obo/CL_0010005

Removed

• atrioventricular bundle cell EquivalentTo native cell and (part_of some bundle of His)

• atrioventricular bundle cell SubClassOf animal cell

Added

• atrioventricular bundle cell EquivalentTo cell and (part_of some bundle of His)

barrier cell http://purl.obolibrary.org/obo/CL_0000215

Removed

• barrier cell SubClassOf native cell

Added

• barrier cell SubClassOf cell

binucleate cell http://purl.obolibrary.org/obo/CL_0000227

Removed

• binucleate cell EquivalentTo native cell and (bearer of some binucleate)

Added

• binucleate cell EquivalentTo cell and (bearer of some binucleate)

bladder cell http://purl.obolibrary.org/obo/CL_1001319

Removed

• bladder cell EquivalentTo animal cell and (part_of some urinary bladder)

• bladder cell SubClassOf animal cell

  • is_inferred "true"

Added

• bladder cell EquivalentTo cell and (part_of some urinary bladder)

bone cell http://purl.obolibrary.org/obo/CL_0001035

Removed

• bone cell EquivalentTo animal cell and (part_of some bone element)

• bone cell SubClassOf animal cell

  • is_inferred "true"

Added

• bone cell EquivalentTo cell and (part_of some bone element)

brain vascular cell http://purl.obolibrary.org/obo/CL_4023072

Removed

• brain vascular cell EquivalentTo native cell and (part_of some vasculature of brain)

Added

• brain vascular cell EquivalentTo cell and (part_of some vasculature of brain)

cap cell http://purl.obolibrary.org/obo/CL_0000676

Removed

• cap cell SubClassOf animal cell

cardiac myoblast http://purl.obolibrary.org/obo/CL_0010021

Removed

• cardiac myoblast SubClassOf animal cell

cardiac septum cell http://purl.obolibrary.org/obo/CL_2000022

Removed

• cardiac septum cell EquivalentTo native cell and (part_of some cardiac septum)

• cardiac septum cell SubClassOf animal cell

Added

• cardiac septum cell EquivalentTo cell and (part_of some cardiac septum)

cardiac valve cell http://purl.obolibrary.org/obo/CL_1000147

Removed

• cardiac valve cell EquivalentTo native cell and (part_of some cardiac valve)

• cardiac valve cell SubClassOf animal cell

Added

• cardiac valve cell EquivalentTo cell and (part_of some cardiac valve)

cardioblast (sensu Arthropoda) http://purl.obolibrary.org/obo/CL_0000465

Removed

• cardioblast (sensu Arthropoda) SubClassOf animal cell

cardiocyte http://purl.obolibrary.org/obo/CL_0002494

Removed

• cardiocyte SubClassOf animal cell

cell of skeletal muscle http://purl.obolibrary.org/obo/CL_0000188

Removed

• cell of skeletal muscle SubClassOf animal cell

choroidal cell of the eye http://purl.obolibrary.org/obo/CL_0000348

Removed

• choroidal cell of the eye SubClassOf animal cell

choroidal melanocyte http://purl.obolibrary.org/obo/CL_4030000

Removed

• choroidal melanocyte SubClassOf animal cell

ciliated cell http://purl.obolibrary.org/obo/CL_0000064

Removed

• ciliated cell EquivalentTo native cell and (has part some cilium)

Added

• ciliated cell EquivalentTo cell and (has part some cilium)

circulating cell http://purl.obolibrary.org/obo/CL_0000080

Removed

• circulating cell EquivalentTo native cell and (part_of some haemolymphatic fluid)

Added

• circulating cell EquivalentTo cell and (part_of some haemolymphatic fluid)

cnidocyte http://purl.obolibrary.org/obo/CL_0011029

Removed

• cnidocyte SubClassOf animal cell

coelomocyte http://purl.obolibrary.org/obo/CL_0000421

Removed

• coelomocyte SubClassOf animal cell

collar cell http://purl.obolibrary.org/obo/CL_0010016

Removed

• collar cell SubClassOf animal cell

Added

• collar cell SubClassOf cell

compound eye cone cell http://purl.obolibrary.org/obo/CL_0000718

Removed

• compound eye cone cell SubClassOf animal cell

compound eye retinal cell http://purl.obolibrary.org/obo/CL_0009001

Removed

• compound eye retinal cell SubClassOf animal cell

connective tissue cell http://purl.obolibrary.org/obo/CL_0002320

Removed

• connective tissue cell SubClassOf animal cell

contractile cell http://purl.obolibrary.org/obo/CL_0000183

Removed

• contractile cell SubClassOf native cell

Added

• contractile cell SubClassOf cell

corneocyte http://purl.obolibrary.org/obo/CL_0002153

Removed

• corneocyte SubClassOf animal cell

cyanoblast http://purl.obolibrary.org/obo/CL_0005005

Removed

• cyanoblast SubClassOf animal cell

cyanophore http://purl.obolibrary.org/obo/CL_0000747

Removed

• cyanophore SubClassOf animal cell

dark melanocyte http://purl.obolibrary.org/obo/CL_0002566

Removed

• dark melanocyte SubClassOf animal cell

defensive cell http://purl.obolibrary.org/obo/CL_0000473

Removed

• defensive cell SubClassOf native cell

Added

• defensive cell SubClassOf cell

dental papilla cell http://purl.obolibrary.org/obo/CL_0000345

Removed

• dental papilla cell SubClassOf animal cell

dermal melanocyte http://purl.obolibrary.org/obo/CL_0002482

Removed

• dermal melanocyte SubClassOf animal cell

• dermal melanocyte SubClassOf melanocyte

  • is_inferred "true"

diploid cell http://purl.obolibrary.org/obo/CL_0000415

Removed

• diploid cell SubClassOf native cell

Added

• diploid cell SubClassOf cell

distal tip cell (sensu Nematoda) http://purl.obolibrary.org/obo/CL_0000661

Removed

• distal tip cell (sensu Nematoda) SubClassOf animal cell

egg cell http://purl.obolibrary.org/obo/CL_0000025

Removed

• egg cell SubClassOf animal cell

electrically active cell http://purl.obolibrary.org/obo/CL_0000211

Removed

• electrically active cell SubClassOf native cell

Added

• electrically active cell SubClassOf cell

embryonic cell (metazoa) http://purl.obolibrary.org/obo/CL_0002321

Removed

• embryonic cell (metazoa) SubClassOf animal cell

Added

• embryonic cell (metazoa) SubClassOf cell

endocrine cell http://purl.obolibrary.org/obo/CL_0000163

Removed

• endocrine cell EquivalentTo native cell and (capable of some
  (hormone secretion and (has target end location some circulatory system)))

• endocrine cell SubClassOf animal cell

Added

• endocrine cell EquivalentTo cell and (capable of some
  (hormone secretion and (has target end location some circulatory system)))

epidermal melanocyte http://purl.obolibrary.org/obo/CL_2000000

Removed

• epidermal melanocyte SubClassOf animal cell

epithelial cell http://purl.obolibrary.org/obo/CL_0000066

Removed

• epithelial cell SubClassOf animal cell

Added

• epithelial cell SubClassOf cell

epithelial melanocyte http://purl.obolibrary.org/obo/CL_0002484

Removed

• epithelial melanocyte SubClassOf animal cell

equatorial cone cell (sensu Endopterygota) http://purl.obolibrary.org/obo/CL_0000721

Removed

• equatorial cone cell (sensu Endopterygota) SubClassOf animal cell

erythrophore http://purl.obolibrary.org/obo/CL_0000574

Removed

• erythrophore SubClassOf animal cell

eukaryotic cell http://purl.obolibrary.org/obo/CL_0000255

Removed

• eukaryotic cell EquivalentTo native cell and (only in taxon some Eukaryota)

Added

• eukaryotic cell EquivalentTo cell and (only in taxon some Eukaryota)

exocrine cell http://purl.obolibrary.org/obo/CL_0000152

Removed

• exocrine cell SubClassOf animal cell

extraembryonic cell http://purl.obolibrary.org/obo/CL_0000349

Removed

• extraembryonic cell EquivalentTo animal cell and (part_of some extraembryonic structure)

Added

• extraembryonic cell EquivalentTo cell and (part_of some extraembryonic structure)

fast muscle myoblast http://purl.obolibrary.org/obo/CL_0000858

Removed

• fast muscle myoblast SubClassOf animal cell

fat body cell http://purl.obolibrary.org/obo/CL_0000565

Removed

• fat body cell SubClassOf animal cell

fetal hepatobiliary progenitor cell http://purl.obolibrary.org/obo/CL_0009013

Removed

• fetal hepatobiliary progenitor cell SubClassOf animal cell

fibro/adipogenic progenitor cell http://purl.obolibrary.org/obo/CL_0009099

Removed

• fibro/adipogenic progenitor cell SubClassOf animal cell

flagellated sperm cell http://purl.obolibrary.org/obo/CL_0011016

Removed

• flagellated sperm cell SubClassOf animal cell

flask cell http://purl.obolibrary.org/obo/CL_0007023

Removed

• flask cell SubClassOf animal cell

• flask cell SubClassOf native cell

Added

• flask cell SubClassOf cell

foam cell http://purl.obolibrary.org/obo/CL_0000891

Removed

• foam cell SubClassOf native cell

Added

• foam cell SubClassOf cell

follicular dendritic cell http://purl.obolibrary.org/obo/CL_0000442

Removed

• follicular dendritic cell SubClassOf animal cell

folliculostellate cell http://purl.obolibrary.org/obo/CL_0000642

Removed

• folliculostellate cell SubClassOf animal cell

foreskin melanocyte http://purl.obolibrary.org/obo/CL_2000045

Removed

• foreskin melanocyte SubClassOf animal cell

fungal cell http://purl.obolibrary.org/obo/CL_0000521

Removed

• fungal cell DisjointWith animal cell

• fungal cell EquivalentTo native cell and (only in taxon some Fungi)

Added

• fungal cell EquivalentTo cell and (only in taxon some Fungi)

fusion competent myoblast http://purl.obolibrary.org/obo/CL_0000621

Removed

• fusion competent myoblast SubClassOf animal cell

gamete-nursing cell http://purl.obolibrary.org/obo/CL_4029001

Removed

• gamete-nursing cell SubClassOf native cell

Added

• gamete-nursing cell SubClassOf cell

ganglion mother cell http://purl.obolibrary.org/obo/CL_0000469

Removed

• ganglion mother cell SubClassOf animal cell

germ line cell http://purl.obolibrary.org/obo/CL_0000039

Removed

• germ line cell SubClassOf native cell

Added

• germ line cell SubClassOf cell

germ line stem cell http://purl.obolibrary.org/obo/CL_0000014

Removed

• germ line stem cell SubClassOf germ line cell
  • is_inferred "true"

germline-derived nurse cell http://purl.obolibrary.org/obo/CL_4029002

Removed

• germline-derived nurse cell SubClassOf animal cell

glioblast http://purl.obolibrary.org/obo/CL_0000030

Removed

• glioblast SubClassOf animal cell

gut absorptive cell http://purl.obolibrary.org/obo/CL_0000677

Removed

• gut absorptive cell SubClassOf absorptive cell

Added

• gut absorptive cell SubClassOf cell

hair follicle cell http://purl.obolibrary.org/obo/CL_0002559

Removed

• hair follicle cell SubClassOf animal cell

hair follicle melanocyte http://purl.obolibrary.org/obo/CL_0002483

Removed

• hair follicle melanocyte SubClassOf animal cell

haploid cell http://purl.obolibrary.org/obo/CL_0000413

Removed

• haploid cell EquivalentTo native cell and (bearer of some haploid)

Added

• haploid cell EquivalentTo cell and (bearer of some haploid)

hatching gland cell http://purl.obolibrary.org/obo/CL_0000249

Removed

• hatching gland cell SubClassOf animal cell

hematopoietic cell http://purl.obolibrary.org/obo/CL_0000988

Removed

• hematopoietic cell SubClassOf animal cell

hepatic oval stem cell http://purl.obolibrary.org/obo/CL_0002196

Removed

• hepatic oval stem cell SubClassOf animal cell

hypothalamus cell http://purl.obolibrary.org/obo/CL_2000030

Removed

• hypothalamus cell EquivalentTo native cell and (part_of some hypothalamus)

• hypothalamus cell SubClassOf animal cell

Added

• hypothalamus cell EquivalentTo cell and (part_of some hypothalamus)

inner cell mass cell http://purl.obolibrary.org/obo/CL_2000020

Removed

• inner cell mass cell EquivalentTo native cell and (part_of some inner cell mass)

Added

• inner cell mass cell EquivalentTo cell and (part_of some inner cell mass)

interstitial cell http://purl.obolibrary.org/obo/CL_4030031

Removed

• interstitial cell EquivalentTo native cell and (part_of some interstitial tissue)

Added

• interstitial cell EquivalentTo cell and (part_of some interstitial tissue)

invertebrate nurse cell http://purl.obolibrary.org/obo/CL_0000026

Removed

• invertebrate nurse cell SubClassOf animal cell

iridoblast http://purl.obolibrary.org/obo/CL_0005001

Removed

• iridoblast SubClassOf animal cell

iridophore http://purl.obolibrary.org/obo/CL_0000431

Removed

• iridophore SubClassOf animal cell

kidney cell http://purl.obolibrary.org/obo/CL_1000497

Removed

• kidney cell EquivalentTo animal cell and (part_of some kidney)

• kidney cell SubClassOf animal cell

  • is_inferred "true"

Added

• kidney cell EquivalentTo cell and (part_of some kidney)

labyrinth supporting cell http://purl.obolibrary.org/obo/CL_0000631

Removed

• labyrinth supporting cell SubClassOf animal cell

larval midgut cell http://purl.obolibrary.org/obo/CL_0009003

Removed

• larval midgut cell SubClassOf animal cell

leucoblast http://purl.obolibrary.org/obo/CL_0005003

Removed

• leucoblast SubClassOf animal cell

leucophore http://purl.obolibrary.org/obo/CL_0000571

Removed

• leucophore SubClassOf animal cell

ligament cell http://purl.obolibrary.org/obo/CL_0000384

Removed

• ligament cell SubClassOf animal cell

light melanocyte http://purl.obolibrary.org/obo/CL_0002567

Removed

• light melanocyte SubClassOf animal cell

lower urinary tract cell http://purl.obolibrary.org/obo/CL_1000600

Removed

• lower urinary tract cell EquivalentTo animal cell and (part_of some lower urinary tract)

• lower urinary tract cell SubClassOf animal cell

  • is_inferred "true"

Added

• lower urinary tract cell EquivalentTo cell and (part_of some lower urinary tract)

lung ciliated cell http://purl.obolibrary.org/obo/CL_1000271

Removed

• lung ciliated cell SubClassOf animal cell

lung secretory cell http://purl.obolibrary.org/obo/CL_1000272

Removed

• lung secretory cell SubClassOf animal cell

male gamete http://purl.obolibrary.org/obo/CL_0000408

Removed

• male gamete SubClassOf animal cell

malpighian tubule tip cell http://purl.obolibrary.org/obo/CL_1000182

Removed

• malpighian tubule tip cell SubClassOf animal cell

melanoblast http://purl.obolibrary.org/obo/CL_0000541

Removed

• melanoblast SubClassOf animal cell

melanocyte http://purl.obolibrary.org/obo/CL_0000148

Removed

• melanocyte SubClassOf animal cell

melanocyte of eyelid http://purl.obolibrary.org/obo/CL_1000391

Removed

• melanocyte of eyelid SubClassOf animal cell

melanocyte of foreskin http://purl.obolibrary.org/obo/CL_2000082

Removed

• melanocyte of foreskin SubClassOf animal cell

melanocyte of skin http://purl.obolibrary.org/obo/CL_1000458

Removed

• melanocyte of skin SubClassOf animal cell

melanocyte of skin of face http://purl.obolibrary.org/obo/CL_2000081

Removed

• melanocyte of skin of face SubClassOf animal cell

mesenchymal cell http://purl.obolibrary.org/obo/CL_0008019

Removed

• mesenchymal cell SubClassOf animal cell

mesenchyme condensation cell http://purl.obolibrary.org/obo/CL_0000335

Removed

• mesenchyme condensation cell SubClassOf animal cell

micropylar cell http://purl.obolibrary.org/obo/CL_0007022

Removed

• micropylar cell SubClassOf animal cell

Added

• micropylar cell SubClassOf cell

migratory neural crest cell http://purl.obolibrary.org/obo/CL_0000333

Removed

• migratory neural crest cell SubClassOf native cell

Added

• migratory neural crest cell SubClassOf cell

mitogenic signaling cell http://purl.obolibrary.org/obo/CL_0000422

Removed

• mitogenic signaling cell SubClassOf native cell

Added

• mitogenic signaling cell SubClassOf cell

motile cell http://purl.obolibrary.org/obo/CL_0000219

Removed

• motile cell EquivalentTo native cell and (capable of some cell motility)

Added

• motile cell EquivalentTo cell and (capable of some cell motility)

motile sperm cell http://purl.obolibrary.org/obo/CL_0011013

Removed

• motile sperm cell SubClassOf animal cell

• motile sperm cell SubClassOf sperm

multinucleate cell http://purl.obolibrary.org/obo/CL_0000228

Removed

• multinucleate cell EquivalentTo native cell and (bearer of some multinucleate)

Added

• multinucleate cell EquivalentTo cell and (bearer of some multinucleate)

mural cell http://purl.obolibrary.org/obo/CL_0008034

Removed

• mural cell SubClassOf animal cell

muscle cell http://purl.obolibrary.org/obo/CL_0000187

Removed

• muscle cell SubClassOf animal cell

muscle founder cell http://purl.obolibrary.org/obo/CL_0008006

Removed

• muscle founder cell SubClassOf animal cell

muscle precursor cell http://purl.obolibrary.org/obo/CL_0000680

Removed

• muscle precursor cell SubClassOf animal cell

myoblast http://purl.obolibrary.org/obo/CL_0000056

Removed

• myoblast SubClassOf animal cell

myoendocrine cell http://purl.obolibrary.org/obo/CL_0000689

Removed

• myoendocrine cell SubClassOf animal cell

myoepithelial cell http://purl.obolibrary.org/obo/CL_0000185

Removed

• myoepithelial cell SubClassOf animal cell

myofibroblast cell http://purl.obolibrary.org/obo/CL_0000186

Removed

• myofibroblast cell SubClassOf animal cell

native cell http://purl.obolibrary.org/obo/CL_0000003

Removed

• native cell label "native cell"

• native cell comment "To accommodate unicellular organisms better, 'cell in vivo' has been re-labeled 'native cell' to better represent its intended meaning - that is, that it is a cell in the context of a multicellular organism or in a natural environment. 'Native' is intended to contrast with 'in vitro', which refers to cells or other biological entities that have been intentionally placed in a controlled, non-natural setting for the purpose of study or manipulation. (MAH 1.12.12)."

• native cell definition "A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment)."

  • database_cross_reference "CARO:mah"

• native cell SubClassOf cell

Added

• native cell term replaced by cell

• native cell deprecated true

• native cell comment "obsolete native cell and animal cell, they are confusing and cause missing inferences #2124"

• native cell definition "OBSOLETE. A cell that is found in a natural setting, which includes multicellular organism cells 'in vivo' (i.e. part of an organism), and unicellular organisms 'in environment' (i.e. part of a natural environment)."

  • database_cross_reference "CARO:mah"

• native cell label "obsolete native cell"

neural cell http://purl.obolibrary.org/obo/CL_0002319

Removed

• neural cell EquivalentTo animal cell and (part_of some nervous system)

• neural cell SubClassOf animal cell

Added

• neural cell EquivalentTo cell and (part_of some nervous system)

neural progenitor cell http://purl.obolibrary.org/obo/CL_0011020

Removed

• neural progenitor cell SubClassOf animal cell

neuromast mantle cell http://purl.obolibrary.org/obo/CL_0000851

Removed

• neuromast mantle cell SubClassOf animal cell

nitrogen fixing cell http://purl.obolibrary.org/obo/CL_0000725

Removed

• nitrogen fixing cell EquivalentTo native cell and (capable of some nitrogen fixation)

• nitrogen fixing cell SubClassOf native cell

Added

• nitrogen fixing cell EquivalentTo cell and (capable of some nitrogen fixation)

non-motile sperm cell http://purl.obolibrary.org/obo/CL_0011014

Removed

• non-motile sperm cell SubClassOf animal cell

non-terminally differentiated cell http://purl.obolibrary.org/obo/CL_0000055

Removed

• non-terminally differentiated cell SubClassOf native cell

Added

• non-terminally differentiated cell SubClassOf cell

notochordal cell http://purl.obolibrary.org/obo/CL_0007005

Removed

• notochordal cell SubClassOf native cell

• notochordal cell SubClassOf animal cell

Added

• notochordal cell SubClassOf cell

notochordal sheath cell http://purl.obolibrary.org/obo/CL_0007007

Removed

• notochordal sheath cell SubClassOf animal cell

notochordal vacuole cell http://purl.obolibrary.org/obo/CL_0007008

Removed

• notochordal vacuole cell SubClassOf animal cell

nucleate cell http://purl.obolibrary.org/obo/CL_0002242

Removed

• nucleate cell EquivalentTo native cell and (bearer of some nucleated)

Added

• nucleate cell EquivalentTo cell and (bearer of some nucleated)

oenocyte http://purl.obolibrary.org/obo/CL_0000487

Removed

• oenocyte SubClassOf animal cell

ooblast http://purl.obolibrary.org/obo/CL_0002239

Removed

• ooblast SubClassOf animal cell

oogonial cell http://purl.obolibrary.org/obo/CL_0000024

Removed

• oogonial cell SubClassOf animal cell

oxygen accumulating cell http://purl.obolibrary.org/obo/CL_0000329

Removed

• oxygen accumulating cell EquivalentTo native cell and (capable of some oxygen transport)

Added

• oxygen accumulating cell EquivalentTo cell and (capable of some oxygen transport)

pancreatic endocrine cell http://purl.obolibrary.org/obo/CL_0008024

Removed

• pancreatic endocrine cell SubClassOf animal cell

pancreatic epsilon cell http://purl.obolibrary.org/obo/CL_0005019

Removed

• pancreatic epsilon cell SubClassOf animal cell

paracrine cell http://purl.obolibrary.org/obo/CL_0000512

Removed

• paracrine cell SubClassOf animal cell

paraganglia type 2 cell http://purl.obolibrary.org/obo/CL_0000701

Removed

• paraganglia type 2 cell SubClassOf animal cell

perivascular cell http://purl.obolibrary.org/obo/CL_4033054

Removed

• perivascular cell EquivalentTo native cell and (adjacent to some vasculature)

Added

• perivascular cell EquivalentTo cell and (adjacent to some vasculature)

phagocyte http://purl.obolibrary.org/obo/CL_0000234

Removed

• phagocyte EquivalentTo native cell and (capable of some phagocytosis)

• phagocyte SubClassOf animal cell

Added

• phagocyte EquivalentTo cell and (capable of some phagocytosis)

phagocyte (sensu Nematoda and Protostomia) http://purl.obolibrary.org/obo/CL_0000519

Removed

• phagocyte (sensu Nematoda and Protostomia) SubClassOf animal cell

photosynthetic cell http://purl.obolibrary.org/obo/CL_0000628

Removed

• photosynthetic cell SubClassOf native cell

Added

• photosynthetic cell SubClassOf cell

pigment cell (sensu Nematoda and Protostomia) http://purl.obolibrary.org/obo/CL_0000341

Removed

• pigment cell (sensu Nematoda and Protostomia) SubClassOf animal cell

pigment erythroblast http://purl.obolibrary.org/obo/CL_0005004

Removed

• pigment erythroblast SubClassOf animal cell

pituitary gland cell http://purl.obolibrary.org/obo/CL_2000004

Removed

• pituitary gland cell EquivalentTo native cell and (part_of some pituitary gland)

• pituitary gland cell SubClassOf animal cell

Added

• pituitary gland cell EquivalentTo cell and (part_of some pituitary gland)

polar body http://purl.obolibrary.org/obo/CL_0002090

Removed

• polar body SubClassOf animal cell

polyploid cell http://purl.obolibrary.org/obo/CL_0000412

Removed

• polyploid cell SubClassOf native cell

posterior cone cell (sensu Endopterygota) http://purl.obolibrary.org/obo/CL_0000719

Removed

• posterior cone cell (sensu Endopterygota) SubClassOf animal cell

posterior lateral line neuromast mantle cell http://purl.obolibrary.org/obo/CL_2000038

Removed

• posterior lateral line neuromast mantle cell SubClassOf animal cell

posterior lateral line neuromast supporting cell http://purl.obolibrary.org/obo/CL_2000039

Removed

• posterior lateral line neuromast supporting cell SubClassOf animal cell

preameloblast http://purl.obolibrary.org/obo/CL_0007000

Removed

• preameloblast SubClassOf animal cell

precementoblast http://purl.obolibrary.org/obo/CL_0007002

Removed

• precementoblast SubClassOf animal cell

prechondroblast http://purl.obolibrary.org/obo/CL_0007009

Removed

• prechondroblast SubClassOf animal cell

precursor cell http://purl.obolibrary.org/obo/CL_0011115

Removed

• precursor cell EquivalentTo native cell and (capable of some cell differentiation)

• precursor cell SubClassOf native cell

Added

• precursor cell EquivalentTo cell and (capable of some cell differentiation)

preodontoblast http://purl.obolibrary.org/obo/CL_0007003

Removed

• preodontoblast SubClassOf animal cell

preosteoblast http://purl.obolibrary.org/obo/CL_0007010

Removed

• preosteoblast SubClassOf animal cell

primary polar body http://purl.obolibrary.org/obo/CL_0002091

Removed

• primary polar body SubClassOf animal cell

primary spermatocyte http://purl.obolibrary.org/obo/CL_0000656

Removed

• primary spermatocyte SubClassOf animal cell

• primary spermatocyte SubClassOf spermatocyte

  • is_inferred "true"

primordial germ cell http://purl.obolibrary.org/obo/CL_0000670

Removed

• primordial germ cell SubClassOf animal cell

progenitor cell of endocrine pancreas http://purl.obolibrary.org/obo/CL_0002351

Removed

• progenitor cell of endocrine pancreas SubClassOf animal cell

progenitor cell of mammary luminal epithelium http://purl.obolibrary.org/obo/CL_0009116

Removed

• progenitor cell of mammary luminal epithelium SubClassOf animal cell

prokaryotic cell http://purl.obolibrary.org/obo/CL_0000520

Removed

• prokaryotic cell SubClassOf native cell

Added

• prokaryotic cell SubClassOf cell

quiescent skeletal muscle satellite cell http://purl.obolibrary.org/obo/CL_0008012

Removed

• quiescent skeletal muscle satellite cell SubClassOf animal cell

retinal melanocyte http://purl.obolibrary.org/obo/CL_0002485

Removed

• retinal melanocyte SubClassOf animal cell

• retinal melanocyte SubClassOf melanocyte

  • is_inferred "true"

salivary gland cell http://purl.obolibrary.org/obo/CL_0009005

Removed

• salivary gland cell SubClassOf animal cell

scleral cell http://purl.obolibrary.org/obo/CL_0000347

Removed

• scleral cell SubClassOf animal cell

scolopale cell http://purl.obolibrary.org/obo/CL_0000382

Removed

• scolopale cell SubClassOf animal cell

scolopidial ligament cell http://purl.obolibrary.org/obo/CL_0000407

Removed

• scolopidial ligament cell SubClassOf animal cell

sebaceous gland cell http://purl.obolibrary.org/obo/CL_2000021

Removed

• sebaceous gland cell EquivalentTo native cell and (part_of some sebaceous gland)

• sebaceous gland cell SubClassOf animal cell

Added

• sebaceous gland cell EquivalentTo cell and (part_of some sebaceous gland)

secondary polar body http://purl.obolibrary.org/obo/CL_0002093

Removed

• secondary polar body SubClassOf animal cell

secondary spermatocyte http://purl.obolibrary.org/obo/CL_0000657

Removed

• secondary spermatocyte SubClassOf spermatocyte

  • is_inferred "true"

• secondary spermatocyte SubClassOf animal cell

secretory cell http://purl.obolibrary.org/obo/CL_0000151

Removed

• secretory cell EquivalentTo native cell and (capable of some secretion by cell)

Added

• secretory cell EquivalentTo cell and (capable of some secretion by cell)

sensory receptor cell http://purl.obolibrary.org/obo/CL_0000197

Removed

• sensory receptor cell SubClassOf native cell

serous cell of epithelium of bronchus http://purl.obolibrary.org/obo/CL_1000331

Removed

• serous cell of epithelium of bronchus SubClassOf animal cell

serous cell of epithelium of lobular bronchiole http://purl.obolibrary.org/obo/CL_1000333

Removed

• serous cell of epithelium of lobular bronchiole SubClassOf animal cell

serous cell of epithelium of terminal bronchiole http://purl.obolibrary.org/obo/CL_1000332

Removed

• serous cell of epithelium of terminal bronchiole SubClassOf animal cell

serous cell of epithelium of trachea http://purl.obolibrary.org/obo/CL_1000330

Removed

• serous cell of epithelium of trachea SubClassOf animal cell

• serous cell of epithelium of trachea SubClassOf serous secreting cell

  • is_inferred "true"

sheath cell (sensu Nematoda) http://purl.obolibrary.org/obo/CL_0000367

Removed

• sheath cell (sensu Nematoda) SubClassOf animal cell

single fate stem cell http://purl.obolibrary.org/obo/CL_0000035

Removed

• single fate stem cell EquivalentTo native cell and (bearer of some unipotent) and (capable of some stem cell division)

Added

• single fate stem cell EquivalentTo cell and (bearer of some unipotent) and (capable of some stem cell division)

single nucleate cell http://purl.obolibrary.org/obo/CL_0000226

Removed

• single nucleate cell EquivalentTo native cell and (bearer of some mononucleate)

Added

• single nucleate cell EquivalentTo cell and (bearer of some mononucleate)

skeletal muscle myoblast http://purl.obolibrary.org/obo/CL_0000515

Removed

• skeletal muscle myoblast SubClassOf animal cell

• skeletal muscle myoblast SubClassOf myoblast

  • is_inferred "true"

skeletal muscle satellite cell http://purl.obolibrary.org/obo/CL_0000594

Removed

• skeletal muscle satellite cell SubClassOf animal cell

skeletal muscle satellite myogenic cell http://purl.obolibrary.org/obo/CL_0008020

Removed

• skeletal muscle satellite myogenic cell SubClassOf animal cell

skeletogenic cell http://purl.obolibrary.org/obo/CL_0007001

Removed

• skeletogenic cell SubClassOf native cell

Added

• skeletogenic cell SubClassOf cell

slow muscle myoblast http://purl.obolibrary.org/obo/CL_0000857

Removed

• slow muscle myoblast SubClassOf animal cell

smooth muscle myoblast http://purl.obolibrary.org/obo/CL_0000514

Removed

• smooth muscle myoblast SubClassOf myoblast

  • is_inferred "true"

• smooth muscle myoblast SubClassOf animal cell

somatic cell http://purl.obolibrary.org/obo/CL_0002371

Removed

• somatic cell SubClassOf native cell

• somatic cell SubClassOf animal cell

Added

• somatic cell SubClassOf cell

somatic muscle myoblast http://purl.obolibrary.org/obo/CL_0008018

Removed

• somatic muscle myoblast SubClassOf animal cell

• somatic muscle myoblast SubClassOf myoblast

somatic nurse-like cell http://purl.obolibrary.org/obo/CL_4029003

Removed

• somatic nurse-like cell SubClassOf animal cell

sperm http://purl.obolibrary.org/obo/CL_0000019

Removed

• sperm SubClassOf animal cell

spermatid http://purl.obolibrary.org/obo/CL_0000018

Removed

• spermatid SubClassOf male germ cell

  • is_inferred "true"

• spermatid SubClassOf animal cell

spermatocyte http://purl.obolibrary.org/obo/CL_0000017

Removed

• spermatocyte SubClassOf animal cell

• spermatocyte SubClassOf male germ cell

  • is_inferred "true"

spermatogonium http://purl.obolibrary.org/obo/CL_0000020

Removed

• spermatogonium SubClassOf animal cell

stem cell http://purl.obolibrary.org/obo/CL_0000034

Removed

• stem cell EquivalentTo native cell and (capable of some stem cell division)

• stem cell SubClassOf animal cell

Added

• stem cell EquivalentTo cell and (capable of some stem cell division)

structural cell http://purl.obolibrary.org/obo/CL_0000293

Removed

• structural cell SubClassOf native cell

Added

• structural cell SubClassOf cell

stuff accumulating cell http://purl.obolibrary.org/obo/CL_0000325

Removed

• stuff accumulating cell SubClassOf native cell

Added

• stuff accumulating cell SubClassOf cell

supporting cell http://purl.obolibrary.org/obo/CL_0000630

Removed

• supporting cell SubClassOf native cell

Added

• supporting cell SubClassOf cell

thecogen cell http://purl.obolibrary.org/obo/CL_0000380

Removed

• thecogen cell SubClassOf animal cell

thyroid hormone secreting cell http://purl.obolibrary.org/obo/CL_0000452

Removed

• thyroid hormone secreting cell SubClassOf animal cell

tip cell http://purl.obolibrary.org/obo/CL_0000423

Removed

• tip cell SubClassOf animal cell

tracheobronchial serous cell http://purl.obolibrary.org/obo/CL_0019001

Removed

• tracheobronchial serous cell SubClassOf animal cell

transit amplifying cell http://purl.obolibrary.org/obo/CL_0009010

Removed

• transit amplifying cell SubClassOf native cell

Added

• transit amplifying cell SubClassOf cell

transit amplifying cell of anorectum http://purl.obolibrary.org/obo/CL_0009056

Removed

• transit amplifying cell of anorectum SubClassOf animal cell

transit amplifying cell of appendix http://purl.obolibrary.org/obo/CL_0009027

Removed

• transit amplifying cell of appendix SubClassOf animal cell

transit amplifying cell of colon http://purl.obolibrary.org/obo/CL_0009011

Removed

• transit amplifying cell of colon SubClassOf animal cell

transit amplifying cell of small intestine http://purl.obolibrary.org/obo/CL_0009012

Removed

• transit amplifying cell of small intestine SubClassOf animal cell

transporting cell http://purl.obolibrary.org/obo/CL_0000627

Removed

• transporting cell SubClassOf native cell

Added

• transporting cell SubClassOf cell

ureteral cell http://purl.obolibrary.org/obo/CL_1000601

Removed

• ureteral cell EquivalentTo animal cell and (part_of some ureter)

• ureteral cell SubClassOf animal cell

  • is_inferred "true"

Added

• ureteral cell EquivalentTo cell and (part_of some ureter)

urethra cell http://purl.obolibrary.org/obo/CL_1001320

Removed

• urethra cell EquivalentTo animal cell and (part_of some urethra)

• urethra cell SubClassOf animal cell

  • is_inferred "true"

Added

• urethra cell EquivalentTo cell and (part_of some urethra)

visual pigment cell http://purl.obolibrary.org/obo/CL_0000149

Removed

• visual pigment cell SubClassOf animal cell

visual pigment cell (sensu Nematoda and Protostomia) http://purl.obolibrary.org/obo/CL_0001658

Removed

• visual pigment cell (sensu Nematoda and Protostomia) SubClassOf animal cell

xanthoblast http://purl.obolibrary.org/obo/CL_0005002

Removed

• xanthoblast SubClassOf animal cell

zygote http://purl.obolibrary.org/obo/CL_0010017

Removed

• zygote SubClassOf native cell

Added

• zygote SubClassOf cell

[aleixpuigb]

Hi @bvarner-ebi, could you merge the branch master so I can run the gogoeditdiff, please? It will be easier to see all the changes and to review. Thank you!

[aleixpuigb]

All classes have at least one cell type class as a parent term.