[DO NOT MERGE] CHEBI import #24
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-CARO import seems to cause some error so I removed it -Currently tried `sh run.sh refresh_imports` (thought was to get the mirrors first) - ran into error, but noticed the mirrors seem to have been downloaded, so tried `sh run.sh make no-mirror-refresh-imports` and ran into error
Merged
Memory issues :( will up the memory in yaml file and try again |
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of note: I run into Error 18 when trying to make mirror/chebi.owl |
matentzn
reviewed
Dec 14, 2021
pcl-odk.yml
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| robot_java_args: '-Xmx24G' |
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Wrong file. src/ontology/pcl-odk.yml. Delete this one.
Also: don't forget update_repo
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oh whoops >.< argh that was stupid of me
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24 GB is way too much. 8 is lower limit, try 12.
matentzn
requested changes
Dec 14, 2021
src/ontology/tmp/merged-pcl-edit.owl
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| @@ -18,7 +18,10 @@ | |||
| <dc:contributor>https://orcid.org/0000-0001-7258-9596</dc:contributor> | |||
src/ontology/tmp/pre_seed.txt
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| @@ -58232,6 +58232,7 @@ http://purl.obolibrary.org/obo/UBERON_8440001 | |||
| http://purl.obolibrary.org/obo/UBERON_8440002 | |||
src/ontology/tmp/seed.txt
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| @@ -58234,6 +58234,7 @@ http://purl.obolibrary.org/obo/UBERON_8440003 | |||
| http://purl.obolibrary.org/obo/pcl.owl | |||
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Note: this PR is int base file imports to get CHEBI pulled in and CARO dangling classes removed
-CARO import seems to cause some error so I removed it (I think)
-Currently tried
sh run.sh refresh_imports(thought was to get the mirrors first) - ran into error, but noticed the mirrors seem to have been downloaded, so triedsh run.sh make no-mirror-refresh-importsand ran into error with go_import: