sphinx readthedocs notebook wont execute

[aaronspring]

Description

• for now set in continuing fix_sphinx #94: nbsphinx_execute = "never" # "auto" "always"; jupyter_execute_notebooks = "never" and therefore not execute but should be fixed in the future
• https://nbsphinx.readthedocs.io/en/pydata-theme/pre-executed.html
• came up in fix sphinx #84

What happens

---------------------------------------------------------------------------
JuliaError                                Traceback (most recent call last)
Input In [1], in <cell line: 1>()
----> 1 import xbitinfo as xb
      3 import xarray as xr
      5 xr.set_options(display_style="text")

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/checkouts/94/xbitinfo/__init__.py:4, in <module>
      1 """Top-level package for xbitinfo."""
      3 from ._version import __version__
----> 4 from .bitround import jl_bitround, xr_bitround
      5 from .graphics import plot_bitinformation, plot_distribution
      6 from .save_compressed import get_compress_encoding_nc, get_compress_encoding_zarr

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/checkouts/94/xbitinfo/bitround.py:4, in <module>
      1 import xarray as xr
      2 from numcodecs.bitround import BitRound
----> 4 from .xbitinfo import _jl_bitround, get_keepbits
      7 def _np_bitround(data, keepbits):
      8     """Bitround for Arrays."""

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/checkouts/94/xbitinfo/xbitinfo.py:19, in <module>
     15 path_to_julia_functions = os.path.join(
     16     os.path.dirname(__file__), "bitinformation_wrapper.jl"
     17 )
     18 Main.path = path_to_julia_functions
---> 19 jl.using("BitInformation")
     20 jl.using("Pkg")
     21 jl.eval("include(Main.path)")

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/conda/94/lib/python3.9/site-packages/julia/core.py:644, in Julia.using(self, module)
    642 def using(self, module):
    643     """Load module in Julia by calling the `using module` command"""
--> 644     self.eval("using %s" % module)

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/conda/94/lib/python3.9/site-packages/julia/core.py:621, in Julia.eval(self, src)
    619 if src is None:
    620     return None
--> 621 ans = self._call(src)
    622 if not ans:
    623     return None

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/conda/94/lib/python3.9/site-packages/julia/core.py:549, in Julia._call(self, src)
    547 # logger.debug("_call(%s)", src)
    548 ans = self.api.jl_eval_string(src.encode('utf-8'))
--> 549 self.check_exception(src)
    551 return ans

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/conda/94/lib/python3.9/site-packages/julia/core.py:603, in Julia.check_exception(self, src)
    601 else:
    602     exception = sprint(showerror, self._as_pyobj(res))
--> 603 raise JuliaError(u'Exception \'{}\' occurred while calling julia code:\n{}'
    604                  .format(exception, src))

JuliaError: Exception 'LoadError: InterruptException:
in expression starting at /home/docs/checkouts/readthedocs.org/user_builds/xbitinfo/conda/94/share/julia/packages/Distributions/0h6GE/src/multivariate/mvnormal.jl:415
in expression starting at /home/docs/checkouts/readthedocs.org/user_builds/xbitinfo/conda/94/share/julia/packages/Distributions/0h6GE/src/multivariates.jl:112
in expression starting at /home/docs/checkouts/readthedocs.org/user_builds/xbitinfo/conda/94/share/julia/packages/Distributions/0h6GE/src/Distributions.jl:1
in expression starting at /home/docs/checkouts/readthedocs.org/user_builds/xbitinfo/conda/94/share/julia/packages/BitInformation/VpaaY/src/BitInformation.jl:1' occurred while calling julia code:
using BitInformation

on RTD: https://readthedocs.org/projects/xbitinfo/builds/16814564/

but works locally!

I guess the julia installer doesnt install into the right kernel or I choose the wrong kernel.
Also cannot get nbsphinx_kernel_name = "bitinfo-docs" working in conf.py

[aaronspring]

---------------------------------------------------------------------------
JuliaError                                Traceback (most recent call last)
Cell In [1], line 1
----> 1 import xbitinfo as xb
      3 import xarray as xr
      5 xr.set_options(display_style="text")

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/checkouts/138/xbitinfo/__init__.py:8
      5 except ImportError:
      6     __version__ = "unknown"
----> 8 from .bitround import jl_bitround, xr_bitround
      9 from .graphics import plot_bitinformation, plot_distribution
     10 from .save_compressed import get_compress_encoding_nc, get_compress_encoding_zarr

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/checkouts/138/xbitinfo/bitround.py:4
      1 import xarray as xr
      2 from numcodecs.bitround import BitRound
----> 4 from .xbitinfo import _jl_bitround, get_keepbits
      7 def _np_bitround(data, keepbits):
      8     """Bitround for Arrays."""

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/checkouts/138/xbitinfo/xbitinfo.py:15
     13 already_ran = False
     14 if not already_ran:
---> 15     already_ran = install(quiet=True)
     18 jl = Julia(compiled_modules=False, debug=True)
     19 from julia import Main  # noqa: E402

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/checkouts/138/xbitinfo/julia_helpers.py:38, in install(julia_project, quiet)
     34 Main.eval(
     35     f'Pkg.activate("{_escape_filename(julia_project)}", shared = Bool({int(is_shared)}), {io_arg})'
     36 )
     37 if is_shared:
---> 38     _add_to_julia_project(Main, io_arg)
     40 Main.eval(f"Pkg.instantiate({io_arg})")
     41 Main.eval(f"Pkg.precompile({io_arg})")

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/checkouts/138/xbitinfo/julia_helpers.py:123, in _add_to_julia_project(Main, io_arg)
    113 Main.bitinformation_spec = Main.PackageSpec(
    114     name="BitInformation",
    115     url="https://github.com/milankl/BitInformation.jl",
    116     rev="v0.6.0",
    117 )
    118 Main.statsbase_spec = Main.PackageSpec(
    119     name="StatsBase",
    120     url="https://github.com/JuliaStats/StatsBase.jl",
    121     rev="v0.33.21",
    122 )
--> 123 Main.eval(f"Pkg.add([bitinformation_spec, statsbase_spec], {io_arg})")

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/conda/138/lib/python3.9/site-packages/julia/core.py:621, in Julia.eval(self, src)
    619 if src is None:
    620     return None
--> 621 ans = self._call(src)
    622 if not ans:
    623     return None

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/conda/138/lib/python3.9/site-packages/julia/core.py:549, in Julia._call(self, src)
    547 # logger.debug("_call(%s)", src)
    548 ans = self.api.jl_eval_string(src.encode('utf-8'))
--> 549 self.check_exception(src)
    551 return ans

File ~/checkouts/readthedocs.org/user_builds/xbitinfo/conda/138/lib/python3.9/site-packages/julia/core.py:603, in Julia.check_exception(self, src)
    601 else:
    602     exception = sprint(showerror, self._as_pyobj(res))
--> 603 raise JuliaError(u'Exception \'{}\' occurred while calling julia code:\n{}'
    604                  .format(exception, src))

JuliaError: Exception 'InterruptException:' occurred while calling julia code:
Pkg.add([bitinformation_spec, statsbase_spec], io=devnull)