Collection of utility tools for VCF/BCF

• docker: all script needed to build a docker file comprising all binaries
• diploidizer: transforms a VCF/BCF with mixed diploid and haploid calls into a fully diploid one
• fillfreqs: populate vcf with AC/AN
• liftover: liftover a vcf in a memory less fashion
• mendel: computes mendel inconsistencies
• pedphasing: phase vcf using a pedigrees
• swapalleles: swap all alleles

fillfreqs

Example:

liftover

Example:

mendel

Example:

pedphasing

Example:

swapalleles

Example:

License

This project is licensed under the MIT License - see the LICENSE file for details