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@ohmeta

ohmeta

The bioinformatics pipelines and genome catalogues for robust microbiome research.

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  1. metapi metapi Public

    A general metagenomics data mining system focus on robust microbiome research

    Python 56 17

  2. quantpi quantpi Public

    Microbiome profiling

    Python 16 2

Repositories

Showing 10 of 54 repositories
  • MAGIC Public

    The Metagenome-Assembled Genome Inventory for Children (MAGIC)

    ohmeta/MAGIC’s past year of commit activity
    1 0 0 0 Updated Oct 25, 2024
  • quantpi Public

    Microbiome profiling

    ohmeta/quantpi’s past year of commit activity
    Python 16 GPL-3.0 2 0 0 Updated Oct 16, 2024
  • amdpi Public

    AMD: research power CPU

    ohmeta/amdpi’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 15, 2024
  • metapi Public

    A general metagenomics data mining system focus on robust microbiome research

    ohmeta/metapi’s past year of commit activity
    Python 56 GPL-3.0 17 2 0 Updated Sep 14, 2024
  • phanta Public Forked from bhattlab/phanta

    Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes

    ohmeta/phanta’s past year of commit activity
    Python 0 MIT 9 0 0 Updated Sep 4, 2024
  • simpi Public

    Simulate metagenomics sequencing data for complex microbiome community of bacteriome, archaeome, virome, mycobiome, mobilome and resistome.

    ohmeta/simpi’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 28, 2024
  • qiimepi Public

    Snakemake version of QIIME2

    ohmeta/qiimepi’s past year of commit activity
    Python 1 0 0 0 Updated Apr 5, 2024
  • strainpi Public

    A pipeline for identify strains from metagenomics data

    ohmeta/strainpi’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Mar 21, 2024
  • rnapi Public

    RNA seq analysis pipeline

    ohmeta/rnapi’s past year of commit activity
    Python 3 1 0 0 Updated Mar 12, 2024
  • gtdb-rev Public
    ohmeta/gtdb-rev’s past year of commit activity
    0 0 0 0 Updated Oct 12, 2023
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