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Okinawa Institute of Science & Technology

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  1. Usiigaci Usiigaci Public

    Usiigaci: stain-free cell tracking in phase contrast microscopy enabled by supervised machine learning

    Jupyter Notebook 193 68

  2. LaTeX-templates LaTeX-templates Public

    Graduate School LaTeX templates for Lab rotation proposal + report, OIST beamer and Thesis + thesis proposal

    62 56

  3. optinist optinist Public

    calcium imaging pipeline tool

    TypeScript 37 13

  4. DenseObjectDetection DenseObjectDetection Public

    Detection of objects in an image using segmentation

    Python 34 14

  5. DenseObjectAnnotation DenseObjectAnnotation Public

    Tool to annotate objects in images.

    JavaScript 17 8

  6. course-scheduler course-scheduler Public

    Python code to generate course schedules for the Graduate School

    Python 12 6

Repositories

Showing 10 of 161 repositories
  • BioinfoUgrp Public

    OIST Bioinfo user group

    oist/BioinfoUgrp’s past year of commit activity
    Shell 7 2 1 0 Updated Nov 2, 2024
  • LuscombeU_stlpreprocess Public

    Download and pre-process genomes for the Scrambling in the Tree of Life project

    oist/LuscombeU_stlpreprocess’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Nov 1, 2024
  • plessy_pairwiseGenomeComparison Public

    Draft workflow for pairwise genome comparison. We recommend you use the new nf-core version instead: https://nf-cor.e/pairgenomealign

    oist/plessy_pairwiseGenomeComparison’s past year of commit activity
    Nextflow 4 3 2 0 Updated Nov 1, 2024
  • emevo Public

    Simluate Embodied Evolution of Agents

    oist/emevo’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Nov 1, 2024
  • iSciComp Public

    JupyterBook: Introduction to Scientific Computation

    oist/iSciComp’s past year of commit activity
    Jupyter Notebook 0 CC0-1.0 0 0 0 Updated Oct 30, 2024
  • VisualStimulation Public

    matlab gui for vstim with psychophysics toolbox

    oist/VisualStimulation’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Oct 24, 2024
  • iridophore-automeasure Public

    Python code for automated measuring of iridophore crystals from TEM images

    oist/iridophore-automeasure’s past year of commit activity
    Python 0 0 0 0 Updated Oct 23, 2024
  • LuscombeU_annotationpolish Public

    R package for annotation polishing

    oist/LuscombeU_annotationpolish’s past year of commit activity
    R 1 0 1 0 Updated Oct 18, 2024
  • LuscombeU_nfcore_pairgenomealign_fork Public Forked from nf-core/pairgenomealign

    Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results

    oist/LuscombeU_nfcore_pairgenomealign_fork’s past year of commit activity
    Nextflow 0 MIT 2 0 0 Updated Oct 15, 2024
  • LuscombeU_stlrepeatmask Public Forked from U13bs1125/pairgenomealign_windowmask

    Mask genomic repeats and low-complexity regions for the Scrambling in the Tree of Life project

    oist/LuscombeU_stlrepeatmask’s past year of commit activity
    Nextflow 0 MIT 1 0 0 Updated Oct 10, 2024
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