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flagInversions misclassifies non-inversions #2

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charles-plessy opened this issue Sep 22, 2021 · 0 comments
Closed

flagInversions misclassifies non-inversions #2

charles-plessy opened this issue Sep 22, 2021 · 0 comments
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@charles-plessy
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> flagInversions(inv4)
GRanges object with 3 ranges and 2 metadata columns:
      seqnames    ranges strand |      query   inv
         <Rle> <IRanges>  <Rle> |  <GRanges> <Rle>
  [1]      XSR   101-180      - | S1:101-200  TRUE
  [2]      XSR 1201-1300      + | S1:201-300 FALSE
  [3]      XSR   320-400      - | S1:301-400 FALSE
  -------
  seqinfo: 1 sequence from an unspecified genome; no seqlengths
@charles-plessy charles-plessy added the bug Something isn't working label Sep 24, 2021
charles-plessy added a commit that referenced this issue Sep 24, 2021
@charles-plessy
Check if flagInversions input was sorted.
96db467 
Closes Issue #2.
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