omnibenchmark

Omnibenchmark, a continuous benchmarking tool.

Install

With poetry or pip. With micromamba if handling software with conda. See the tutorial.

Releases

See our tags.

Developer notes

Please note the omni-schema dependency. Benchmark YAML schemas are updated by:

- Update src/omni_schema/schema/omni_schema.yaml manually
- `make all`
- Consider `make deploy`

Acknowledgements

Omnibenchmark incorporates great FOSS components, including but not limited to: Snakemake, easybuild, apptainer, lmod, LinkML, git. Thank you!

Preprints

• Omnibenchmark (alpha) for continuous and open benchmarking in bioinformatics (2024)
• Building a continuous benchmarking ecosystem in bioinformatics (2024)