Detect putative inteins in a given genome.
Source notebook: intein_finder.ipynb
See the evaluated notebook at https://omsai.github.io/intein_finder/
The notebook is evaluated and deployed by Travis a few minutes after each commit.
To run the notebook on your machine, install jupyter notebook and make
sure ~/.local/bin or similar in your PATH per
PEP 370:
pip install --upgrade --user notebook
Install the dependencies of this particular notebook:
git clone https://github.com/omsai/intein_finder
cd intein_finder
pip install --upgrade --user -r requirements.txt
Run the notebook:
make notebook
To save changes to the notebook in git, install the git-hooks:
make git-hooks
With the hooks, git diff, etc will ignore the output blocks and only
save changes to the input blocks.