Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Overrepresented sequences belong to highly expressed chloroplast-related genes #45

Closed
ocho opened this issue Mar 21, 2018 · 1 comment
Closed

Overrepresented sequences belong to highly expressed chloroplast-related genes #45

ocho opened this issue Mar 21, 2018 · 1 comment

Comments

@ocho
Copy link

ocho commented Mar 21, 2018 •
edited
Loading

How can one keep these overrepresend sequences? For example I used this sample "SRR3100237"

fastp -i SRA/out/SRR3100237_1.fastq.gz
-I SRA/out/SRR3100237_2.fastq.gz
-o FASTP/SRR3100237_1_trim.fastq.gz
-O FASTP/SRR3100237_2_trim.fastq.gz
-h Reports/SRR3100237 -R "SRR3100237" -l 36 -c -g -p -M 30 -w 6 -5 -3

fastp-report_SRR3100237.zip

looking forward!
@sfchen
Copy link
Member

sfchen commented Mar 22, 2018

Overrepresented sequences are not discarded.

The overrepresentation analysis just give a profiling of these overrepresented sequences.

@ocho ocho closed this as completed Mar 22, 2018
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@ocho @sfchen