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Adding aa_ref argument to StopLoss for variants which delete codons before stop #203

Merged
merged 6 commits into from
Dec 5, 2016
Merged

Adding aa_ref argument to StopLoss for variants which delete codons before stop #203

merged 6 commits into from
Dec 5, 2016

Commits on Dec 3, 2016

  1. added test case for issue 202

    @iskandr
    iskandr committed Dec 3, 2016
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  2. added aa_ref as init arg to StopLoss

    @iskandr
    iskandr committed Dec 3, 2016
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  3. extended alt amino acid seq in test

    @iskandr
    iskandr committed Dec 3, 2016
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Commits on Dec 5, 2016

  1. renamed extended_protein_sequence to aa_alt but unsure if any other e… 

    …ffects required '*' in aa_ref
    @iskandr
    iskandr committed Dec 5, 2016
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  2. got rid of '*' in aa_alt sequence

    @iskandr
    iskandr committed Dec 5, 2016
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  3. fixed format string in ValueError

    @iskandr
    iskandr committed Dec 5, 2016
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