Showing 5 significant figures for floats in Vaxrank reports.

.gitignore

@@ -67,6 +67,6 @@ vaccine-peptides-report.html
 vaccine-peptides-report.pdf
 vaccine-peptides-report.xlsx
 vaccine-peptides-report.json
+vaccine-peptides-all-passing.csv
 vaccine-peptides.csv
 neoepitope-report.xlsx
-all_variants.csv

run-vaxrank-b16-test-data.sh

@@ -6,7 +6,7 @@ vaxrank \
     --mhc-alleles H2-Kb,H2-Db \
     --mhc-epitope-lengths 8 \
     --padding-around-mutation 0 \
-    --min-epitope-score 0.0 \
+    --min-epitope-score 10e-100 \
     --num-epitopes-per-peptide 5 \
     --output-ascii-report vaccine-peptides-report.txt \
     --output-html-report vaccine-peptides-report.html \
@@ -15,7 +15,7 @@ vaxrank \
     --output-neoepitope-report neoepitope-report.xlsx \
     --output-json-file vaccine-peptides-report.json \
     --output-csv vaccine-peptides.csv \
-    --output-passing-variants-csv all_variants.csv \
+    --output-passing-variants-csv vaccine-peptides-all-passing.csv \
     --output-reviewed-by "John Doe,Jane Doe" \
     --output-final-review "All the Does" \
     --output-patient-id "Test Patient"

vaxrank/__init__.py

@@ -1 +1 @@
-__version__ = "0.8.7"
+__version__ = "0.8.8"

vaxrank/report.py

@@ -413,7 +413,7 @@ def make_pdf_report(
         f.flush()
 
         options = {
-            'zoom': 0.6,
+            'zoom': 0.55,
             'margin-top': '20mm'
         }
 
@@ -449,15 +449,17 @@ def new_columns():
         columns[field] = []
     return columns
 
+def _str_sig_figs(input, n_sig_figs):
+    return '{:g}'.format(float('{:.{p}g}'.format(input, p=n_sig_figs)))
+
 def _sanitize(val):
     """
     Converts values into display-friendly
     """
     if type(val) == bool:
-        val = int(val)
-    elif type(val) == float:
-        val = round(val, 10)
-    return val
+        return int(val)
+    else:
+        return _str_sig_figs(val, 5)
 
 def resize_columns(worksheet, amino_acids_col, pos_col):
     """