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.fseventsd breaks homebrew #625

Closed
4 tasks done
ClashTheBunny opened this issue Jan 19, 2018 · 14 comments
Closed
4 tasks done

.fseventsd breaks homebrew #625

ClashTheBunny opened this issue Jan 19, 2018 · 14 comments

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@ClashTheBunny
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ClashTheBunny commented Jan 19, 2018 •
edited
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  • Confirmed this is a problem with running a brew command and not brew installing or the post-install behaviour of one or more formulae? If it's a formulae-specific problem please file this issue at the relevant tap e.g. for Homebrew/homebrew-core https://github.com/Homebrew/homebrew-core/issues/new
  • Ran brew update and retried your prior step?
  • Ran brew doctor, fixed all issues and retried your prior step?
  • Ran brew config and brew doctor and included their output with your issue?

To help us debug your issue please explain:

  • What you were trying to do (and why)
    I was trying to update packages and run brew doctor.
  • What happened (include command output)
brew upgrade
Updating Homebrew...
Error: Permission denied @ dir_initialize - /usr/local/Cellar/.fseventsd
  • What you expected to happen
    Software to install
  • Step-by-step reproduction instructions (by running brew commands)
    Try to mount /usr/local on high sierra
    Give up and make sub volumes for each brew directory
    Watch it fail on the autocreated ZFS directories like .fseventsd.
tank_new/usr_local_cellar on /usr/local/Cellar (zfs, local, journaled, noatime)
tank_new/usr_local_frameworks on /usr/local/Frameworks (zfs, local, journaled, noatime)
tank_new/usr_local_homebrew on /usr/local/Homebrew (zfs, local, journaled, noatime)
tank_new/usr_local_etc on /usr/local/etc (zfs, local, journaled, noatime)
tank_new/usr_local_include on /usr/local/include (zfs, local, journaled, noatime)
tank_new/usr_local on /usr/local/old (zfs, local, union, journaled, noatime)
tank_new/usr_local_opt on /usr/local/opt (zfs, local, journaled, noatime)
tank_new/usr_local_sbin on /usr/local/sbin (zfs, local, journaled, noatime)
tank_new/usr_local_temp on /usr/local/temp (zfs, local, journaled, noatime)
tank_new/usr_local_var on /usr/local/var (zfs, local, journaled, noatime)
rmason@chip ~ ❯❯❯ HOMEBREW_VERSION: 1.5.0
ORIGIN: https://github.com/Homebrew/brew
HEAD: 985202cf8e3f9e221753dd99adf1e8874fece03a
Last commit: 10 hours ago
Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
Core tap HEAD: 92b8c66b71cc094586dccbd8fa4a0c2a8778fffc
Core tap last commit: 35 minutes ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_CASK_OPTS: --appdir=~/Applications
HOMEBREW_GITHUB_API_TOKEN: set
HOMEBREW_TEMP: /usr/local/Cellar/temp/
HOMEBREW_VISUAL: vim
CPU: quad-core 64-bit sandybridge
Homebrew Ruby: 2.3.3 => /System/Library/Frameworks/Ruby.framework/Versions/2.3/usr/bin/ruby
Clang: 9.0 build 900
Git: 2.15.0 => /usr/local/bin/git
Curl: 7.54.0 => /usr/bin/curl
Perl: /usr/local/bin/perl => /usr/local/Cellar/perl/5.26.1/bin/perl
Python: /usr/local/opt/python/libexec/bin/python => /usr/local/Cellar/python/2.7.14/Frameworks/Python.framework/Versions/2.7/bin/python2.7
Ruby: /usr/local/bin/ruby => /usr/local/Cellar/ruby/2.4.2_1/bin/ruby
Java: 9.0.1, 9, 1.8.0_152
macOS: 10.13.2-x86_64
Xcode: N/A
CLT: 9.2.0.0.1.1510905681
X11: 2.7.11 => /opt/X11
brew doctor
Please note that these warnings are just used to help the Homebrew maintainers
with debugging if you file an issue. If everything you use Homebrew for is
working fine: please don't worry or file an issue; just ignore this. Thanks!

Warning: Unbrewed dylibs were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected dylibs:
  /usr/local/lib/libdiskmgt.1.dylib
  /usr/local/lib/libnvpair.1.dylib
  /usr/local/lib/libuutil.1.dylib
  /usr/local/lib/libzfs.2.dylib
  /usr/local/lib/libzfs_core.1.dylib
  /usr/local/lib/libzpool.1.dylib

Warning: Unbrewed .la files were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected .la files:
  /usr/local/lib/libdiskmgt.la
  /usr/local/lib/libnvpair.la
  /usr/local/lib/libuutil.la
  /usr/local/lib/libzfs.la
  /usr/local/lib/libzfs_core.la
  /usr/local/lib/libzpool.la

Warning: Unbrewed static libraries were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected static libraries:
  /usr/local/lib/libdiskmgt.a
  /usr/local/lib/libnvpair.a
  /usr/local/lib/libuutil.a
  /usr/local/lib/libzfs.a
  /usr/local/lib/libzfs_core.a
  /usr/local/lib/libzpool.a
Error: Permission denied @ dir_initialize - /usr/local/Cellar/.fseventsd
@ClashTheBunny
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Here's the traceback:

Error: Permission denied @ dir_initialize - /usr/local/Cellar/.fseventsd
/System/Library/Frameworks/Ruby.framework/Versions/2.3/usr/lib/ruby/2.3.0/pathname.rb:442:in `open'
/System/Library/Frameworks/Ruby.framework/Versions/2.3/usr/lib/ruby/2.3.0/pathname.rb:442:in `foreach'
/System/Library/Frameworks/Ruby.framework/Versions/2.3/usr/lib/ruby/2.3.0/pathname.rb:442:in `children'
/usr/local/Homebrew/Library/Homebrew/extend/pathname.rb:344:in `subdirs'
/usr/local/Homebrew/Library/Homebrew/formula.rb:1374:in `block in racks'
/usr/local/Homebrew/Library/Homebrew/formula.rb:1373:in `reject'
/usr/local/Homebrew/Library/Homebrew/formula.rb:1373:in `racks'
/usr/local/Homebrew/Library/Homebrew/diagnostic.rb:1000:in `check_for_unlinked_but_not_keg_only'
/usr/local/Homebrew/Library/Homebrew/cmd/doctor.rb:46:in `block in doctor'
/usr/local/Homebrew/Library/Homebrew/cmd/doctor.rb:38:in `each'
/usr/local/Homebrew/Library/Homebrew/cmd/doctor.rb:38:in `doctor'
/usr/local/Homebrew/Library/Homebrew/brew.rb:100:in `<main>'

@ilovezfs
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By default, they'll be owned by root. So you need to sudo chown -R $(whoami) /usr/local/* them.

@ClashTheBunny
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ClashTheBunny commented Jan 19, 2018 •
edited
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I tried that, and only got this far:

Summary 
clashthebunny@chip /u/local ❯❯❯ sudo find /usr/local -not -user $USER | xargs sudo chown ${USER}:admin; sudo chmod -R u+r /usr/local/; brew upgrade --debug
chown: /usr/local: Operation not permitted
Updating Homebrew...
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/dbus.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libuv.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/cmake.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libgcrypt.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/sane-backends.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/links.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/sdl.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/msgpack.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/perl.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/p7zip.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gnu-getopt.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/rlwrap.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/openssl.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ncdu.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/mtr.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/htop.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/pass.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/cfssl.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/pth.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/klavaro.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/docker-swarm.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/lzo.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libffi.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/phantomjs.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libsoxr.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libsamplerate.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/reattach-to-user-namespace.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/aws-shell.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/qrencode.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libsndfile.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/go.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/freetype.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libev.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/archey.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ykpers.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/theora.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::FormulaLoader): loading /usr/local/Homebrew/Library/Taps/railwaycat/homebrew-emacsmacport/Formula/emacs-mac.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/icu4c.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libvorbis.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/adns.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/wakeonlan.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/jadx.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/pulseaudio.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gnu-sed.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libpng.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libyubikey.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/tmux.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/jpeg.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/git.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/vbindiff.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/maven.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ext4fuse.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/yajl.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libunistring.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/cockatrice.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/fortune.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/unibilium.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/mpfr.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ghi.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gobject-introspection.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/pv.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/zsh.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/popt.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gtk+.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/rust.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/openblas.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/dfu-programmer.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/coreutils.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libvterm.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ocaml.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/tokyo-cabinet.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/mplayershell.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/rclone.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libzip.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/pinentry.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/lua.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/asdf.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/pygobject.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gnu-indent.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/json-c.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/python.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gawk.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/berkeley-db.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/jemalloc.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/lumo.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/cscope.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/getmail.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ocamlbuild.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/exercism.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ncftp.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/tree.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/xvid.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/nvm.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/squid.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/aspell.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/flac.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/x264.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/the_silver_searcher.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/graphite2.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/heroku.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/little-cms2.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/screenresolution.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/netcat.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libxml2.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libgpg-error.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ipcalc.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/camlp4.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gtk+3.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/docker.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/mercurial.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/mongodb.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/dirmngr.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libicns.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/pygobject3.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/thrift.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/keychain.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/planck.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/imagemagick.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/watch.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libssh2.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/readline.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/mitmproxy.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/glib.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/pkg-config.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/mutt.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/sphinx-doc.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libxslt.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/xdot.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gettext.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libcroco.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/scummvm.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hub.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/node.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gpg-agent.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/markdown.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/newt.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/kubernetes-cli.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/swig.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libassuan.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/nettle.rb
==> Upgrading 104 outdated packages, with result:
dbus 1.12.2, libuv 1.19.0, cmake 3.10.2, libgcrypt 1.8.2, htop 2.0.2_1, pass 1.7.1_1, freetype 2.9, ykpers 1.18.1, git 2.16.0, libunistring 0.9.8, cockatrice 2.4.0, mpfr 4.0.0, ghi 1.2.0_4, zsh 5.4.2_3, gtk+ 2.24.32, rust 1.23.0, openblas 0.2.20_1, coreutils 8.29, rclone 1.39, pinentry 1.1.0, lua 5.3.4_2, asdf 0.4.1, pygobject 2.28.7_1, python 2.7.14_2, gawk 4.2.0_1, getmail 5.5, ocamlbuild 0.12.0, xvid 1.3.5, nvm 0.33.8, vault 0.9.1, ansifilter 2.9, git-annex 6.20180112, zeromq 4.2.3, libquvi 0.4.1_2, unixodbc 2.3.5_1, scipy 1.0.0_2, aspcud 1.9.4_1, r 3.4.3_1, neovim 0.2.2, libtasn1 4.13, gitup 0.4.1, webpack 3.10.0, transmission 2.92_2, protobuf 3.5.1, entr 3.9_1, gcc@6 6.4.0_1, miniupnpc 2.0.20171212, boost 1.66.0, libmpc 1.1.0, fluid-synth 1.1.9, libxkbcommon 0.8.0, ruby 2.5.0, kops 1.8.0, librsvg 2.42.0, oniguruma 6.7.0, webp 0.6.1, pandoc 2.1.1, harfbuzz 1.7.4, syncthing 0.14.43, cairo 1.14.12, qt 5.10.0_1, libtiff 4.0.9_1, ack 2.22, gnu-tar 1.30, mpv 0.27.0_5, binwalk 2.1.1_4, byobu 5.124, libdvdcss 1.4.1, wget 1.19.2_1, ipython 6.2.1_1, offlineimap 7.1.5, gdbm 1.14.1_1, youtube-dl 2018.01.18, macvim 8.0-144_3, ffmpeg 3.4.1, awscli 1.14.20, python3 3.6.4_2, tidy-html5 5.6.0, faad2 2.8.8, gnupg 2.2.4, pango 1.40.14, gcc 7.2.0_1, tinc 1.0.33, heroku 6.15.17, little-cms2 2.9, rdfind 1.3.5, docker 18.01.0, mercurial 4.4.2_1, mongodb 3.6.2, numpy 1.14.0, thrift 0.11.0, gnutls 3.5.17, planck 2.10.0, imagemagick 7.0.7-21, mitmproxy 2.0.2_2, glib 2.54.3, mutt 1.9.2, sphinx-doc 1.6.6, scummvm 2.0.0, node 9.4.0, gpg-agent 2.0.31, kubernetes-cli 1.9.2, libassuan 2.5.1, nettle 3.4
==> Upgrading gpg-agent
==> Installing dependencies for gpg-agent: libgcrypt, libassuan, pinentry
Error: Resource busy @ dir_s_rmdir - /usr/local/include
/usr/local/Homebrew/Library/Homebrew/extend/pathname.rb:529:in `rmdir'
/usr/local/Homebrew/Library/Homebrew/extend/pathname.rb:529:in `rmdir'
/usr/local/Homebrew/Library/Homebrew/extend/pathname.rb:529:in `rmdir'
/usr/local/Homebrew/Library/Homebrew/extend/pathname.rb:249:in `rmdir_if_possible'
/usr/local/Homebrew/Library/Homebrew/keg.rb:318:in `reverse_each'
/usr/local/Homebrew/Library/Homebrew/keg.rb:318:in `unlink'
/usr/local/Homebrew/Library/Homebrew/formula_installer.rb:528:in `install_dependency'
/usr/local/Homebrew/Library/Homebrew/formula_installer.rb:514:in `block in install_dependencies'
/usr/local/Homebrew/Library/Homebrew/formula_installer.rb:514:in `each'
/usr/local/Homebrew/Library/Homebrew/formula_installer.rb:514:in `install_dependencies'
/usr/local/Homebrew/Library/Homebrew/formula_installer.rb:256:in `install'
/usr/local/Homebrew/Library/Homebrew/cmd/upgrade.rb:150:in `upgrade_formula'
/usr/local/Homebrew/Library/Homebrew/cmd/upgrade.rb:93:in `block in upgrade'
/usr/local/Homebrew/Library/Homebrew/cmd/upgrade.rb:90:in `each'
/usr/local/Homebrew/Library/Homebrew/cmd/upgrade.rb:90:in `upgrade'
/usr/local/Homebrew/Library/Homebrew/brew.rb:100:in `<main>'

@ilovezfs
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Notice I said /usr/local/* not /usr/local

/usr/local itself is off limits to chown'ing and chmod'ing

@ClashTheBunny
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I did do it recursively, but it is the same with the subdirectory glob:

Almost identical 
sudo find /usr/local/* -not -user $USER | xargs sudo chown ${USER}:admin; sudo chmod -R u+r /usr/local/*; brew upgrade --debug                                                                                                                       ⏎
Password:
Updating Homebrew...
==> Auto-updated Homebrew!
Updated 1 tap (caskroom/cask).
No changes to formulae.

/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/dbus.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libuv.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/cmake.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libgcrypt.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/sane-backends.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/cfssl.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/pth.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/klavaro.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/aws-shell.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/freetype.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libev.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/archey.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/theora.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::FormulaLoader): loading /usr/local/Homebrew/Library/Taps/railwaycat/homebrew-emacsmacport/Formula/emacs-mac.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/icu4c.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libvorbis.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/adns.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/wakeonlan.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/jadx.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/pulseaudio.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gnu-sed.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libpng.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libyubikey.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/tmux.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/jpeg.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/git.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/vbindiff.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/maven.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ext4fuse.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/yajl.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libunistring.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/cockatrice.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/fortune.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/unibilium.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/mpfr.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ghi.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gobject-introspection.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/pv.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gdbm.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/youtube-dl.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/rsync.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/macvim.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/atk.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/brew-gem.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ffmpeg.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/awscli.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/python3.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/findutils.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ripgrep.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/autoconf.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/texinfo.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/tidy-html5.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/pixman.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/speexdsp.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gcc.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/cabextract.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/tinc.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/sdl2.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/x264.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libgpg-error.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/ipcalc.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/mutt.rb
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/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libcroco.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/scummvm.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/hub.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/node.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/gpg-agent.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/markdown.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/newt.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/kubernetes-cli.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/swig.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/libassuan.rb
/usr/local/Homebrew/Library/Homebrew/brew.rb (Formulary::TapLoader): loading /usr/local/Homebrew/Library/Taps/homebrew/homebrew-core/Formula/nettle.rb
==> Upgrading 104 outdated packages, with result:
dbus 1.12.2, libuv 1.19.0, cmake 3.10.2, libgcrypt 1.8.2, htop 2.0.2_1, pass 1.7.1_1, freetype 2.9, ykpers 1.18.1, git 2.16.0, libunistring 0.9.8, cockatrice 2.4.0, mpfr 4.0.0, ghi 1.2.0_4, zsh 5.4.2_3, gtk+ 2.24.32, rust 1.23.0, openblas 0.2.20_1, coreutils 8.29, rclone 1.39, pinentry 1.1.0, lua 5.3.4_2, asdf 0.4.1, pygobject 2.28.7_1, python 2.7.14_2, gawk 4.2.0_1, getmail 5.5, ocamlbuild 0.12.0, xvid 1.3.5, nvm 0.33.8, vault 0.9.1, ansifilter 2.9, git-annex 6.20180112, zeromq 4.2.3, libquvi 0.4.1_2, unixodbc 2.3.5_1, scipy 1.0.0_2, aspcud 1.9.4_1, r 3.4.3_1, neovim 0.2.2, libtasn1 4.13, gitup 0.4.1, webpack 3.10.0, transmission 2.92_2, protobuf 3.5.1, entr 3.9_1, gcc@6 6.4.0_1, miniupnpc 2.0.20171212, boost 1.66.0, libmpc 1.1.0, fluid-synth 1.1.9, libxkbcommon 0.8.0, ruby 2.5.0, kops 1.8.0, librsvg 2.42.0, oniguruma 6.7.0, webp 0.6.1, pandoc 2.1.1, harfbuzz 1.7.4, syncthing 0.14.43, cairo 1.14.12, qt 5.10.0_1, libtiff 4.0.9_1, ack 2.22, gnu-tar 1.30, mpv 0.27.0_5, binwalk 2.1.1_4, byobu 5.124, libdvdcss 1.4.1, wget 1.19.2_1, ipython 6.2.1_1, offlineimap 7.1.5, gdbm 1.14.1_1, youtube-dl 2018.01.18, macvim 8.0-144_3, ffmpeg 3.4.1, awscli 1.14.20, python3 3.6.4_2, tidy-html5 5.6.0, faad2 2.8.8, gnupg 2.2.4, pango 1.40.14, gcc 7.2.0_1, tinc 1.0.33, heroku 6.15.17, little-cms2 2.9, rdfind 1.3.5, docker 18.01.0, mercurial 4.4.2_1, mongodb 3.6.2, numpy 1.14.0, thrift 0.11.0, gnutls 3.5.17, planck 2.10.0, imagemagick 7.0.7-21, mitmproxy 2.0.2_2, glib 2.54.3, mutt 1.9.2, sphinx-doc 1.6.6, scummvm 2.0.0, node 9.4.0, gpg-agent 2.0.31, kubernetes-cli 1.9.2, libassuan 2.5.1, nettle 3.4
==> Upgrading gpg-agent
==> Installing dependencies for gpg-agent: libgcrypt, libassuan, pinentry
Error: Resource busy @ dir_s_rmdir - /usr/local/include
/usr/local/Homebrew/Library/Homebrew/extend/pathname.rb:529:in `rmdir'
/usr/local/Homebrew/Library/Homebrew/extend/pathname.rb:529:in `rmdir'
/usr/local/Homebrew/Library/Homebrew/extend/pathname.rb:529:in `rmdir'
/usr/local/Homebrew/Library/Homebrew/extend/pathname.rb:249:in `rmdir_if_possible'
/usr/local/Homebrew/Library/Homebrew/keg.rb:318:in `reverse_each'
/usr/local/Homebrew/Library/Homebrew/keg.rb:318:in `unlink'
/usr/local/Homebrew/Library/Homebrew/formula_installer.rb:528:in `install_dependency'
/usr/local/Homebrew/Library/Homebrew/formula_installer.rb:514:in `block in install_dependencies'
/usr/local/Homebrew/Library/Homebrew/formula_installer.rb:514:in `each'
/usr/local/Homebrew/Library/Homebrew/formula_installer.rb:514:in `install_dependencies'
/usr/local/Homebrew/Library/Homebrew/formula_installer.rb:256:in `install'
/usr/local/Homebrew/Library/Homebrew/cmd/upgrade.rb:150:in `upgrade_formula'
/usr/local/Homebrew/Library/Homebrew/cmd/upgrade.rb:93:in `block in upgrade'
/usr/local/Homebrew/Library/Homebrew/cmd/upgrade.rb:90:in `each'
/usr/local/Homebrew/Library/Homebrew/cmd/upgrade.rb:90:in `upgrade'
/usr/local/Homebrew/Library/Homebrew/brew.rb:100:in `<main>'

and things do seem to be owned by me:

ls -lah /usr/local/include/.fseventsd                                                                                                                                                                                                                ⏎
total 35
drwx------    3 rmason  admin     3B Jan 19 11:13 .
drwxrwxr-x@ 302 rmason  staff   302B Jan 19 14:37 ..
-rw-------    1 rmason  admin    36B Jan 19 11:13 fseventsd-uuid

@ilovezfs
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Hmm. That is interesting. I'll see if I can reproduce it.

@ClashTheBunny
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ClashTheBunny commented Jan 19, 2018 via email

@ilovezfs
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Seems to work fine for me: https://gist.github.com/ilovezfs/838fb922b340281ed8ee259bb4327119

You're missing some of the top level directories so that may be related.

@ilovezfs
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Ah no. There we go

Joes-Mac:zfs ilovezfs$ brew unlink gpg-agent
Unlinking /usr/local/Cellar/gpg-agent/2.0.31... Error: Resource busy @ dir_s_rmdir - /usr/local/share
Joes-Mac:zfs ilovezfs$

hmm

@ilovezfs
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@ClashTheBunny I think this diff fixes it

diff --git a/Library/Homebrew/extend/pathname.rb b/Library/Homebrew/extend/pathname.rb
index 8e10971e1..b4311f13f 100644
--- a/Library/Homebrew/extend/pathname.rb
+++ b/Library/Homebrew/extend/pathname.rb
@@ -255,7 +255,7 @@ class Pathname
     else
       false
     end
-  rescue Errno::EACCES, Errno::ENOENT
+  rescue Errno::EACCES, Errno::ENOENT, Errno::EBUSY
     false
   end

@ilovezfs
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@ClashTheBunny I've opened Homebrew/brew#3702

@ilovezfs
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@ClashTheBunny You will also want Homebrew/brew#3703

@ilovezfs
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Both PRs have been merged so this should now be fixed.

@ClashTheBunny
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Those worked perfectly!! Thanks so much!

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@ClashTheBunny @ilovezfs