Repositories list

• LANDMark

  Public
  Implementation of a decision tree ensemble which splits each node using learned linear and non-linear functions.

  Jupyter Notebook

  •

  MIT License

  •3•0•0•0•Updated Jul 12, 2023Jul 12, 2023

• webPortal

  Public
  STREAM Watershed Project

  R

  •0•0•0•0•Updated Jun 21, 2022Jun 21, 2022

• RobinsonEtAl2022_TorontoHarbour

  Public
  R

  •

  Other

  •0•0•0•0•Updated May 27, 2022May 27, 2022

• SCVUC_COI_metabarcode_pipeline

  Public
  Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes

  bioinformaticscoimetabarcoding+ 1co1

  Perl

  •

  GNU General Public License v3.0

  •1•1•0•0•Updated Jul 16, 2020Jul 16, 2020

• HajibabaeiEtAl2019b_benthos_vs_water

  Public
  Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. PLoS ONE 14(12): e0225409."

  coimetabarcodingfreshwater+ 2co1benthos

  R

  •

  Other

  •0•0•0•0•Updated Dec 20, 2019Dec 20, 2019

• HajibabaeiEtAl2019

  Public
  Datasets and code used to create figures in "Hajibabaei et al., 2019. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. PLoS ONE 14(9): e0220953."

  primercoimetabarcoding+ 2freshwaterco1

  R

  •

  Other

  •0•1•0•0•Updated Dec 20, 2019Dec 20, 2019

• CO1testing

  Public
  COI sequences files used to test the COI Classifier Web Portal

  classificationcoimetabarcoding+ 2co1mtdna

  0•0•0•0•Updated Jun 27, 2018Jun 27, 2018