QuantGen

All

40 repositories

BEDMatrix
Public
A matrix-like wrapper around PLINK .bed files
r genomics genetics plink r-pkg plink2 cran bed
C
•
Other
•2•18•1•0•Updated Sep 6, 2024Sep 6, 2024
MAIZE-HUB
Public
0•7•0•0•Updated Aug 20, 2024Aug 20, 2024
GPTL
Public
Genomic Prediction Using Transfer Learning
R
•0•1•0•0•Updated May 24, 2024May 24, 2024
BGDataExt
Public
Staging Package for BGData
R
•
Other
•0•0•0•0•Updated Nov 29, 2023Nov 29, 2023
BGData
Public
A Suite of Packages for Analysis of Big Genomic Data
gwas genomics genetics r-pkg cran r
R
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Other
•14•34•1•0•Updated Sep 27, 2023Sep 27, 2023
quantgen.github.io
Public
QuantGen Website
HTML
•9•2•0•0•Updated Aug 31, 2023Aug 31, 2023
LAB-SPRING-2023
Public
1•0•0•1•Updated Apr 13, 2023Apr 13, 2023
USDA_means
Public
R
•0•0•0•0•Updated Nov 25, 2022Nov 25, 2022
LAB-Journal-Club-Meetings
Public
Links to our weekly journal club meetings
4•1•0•0•Updated Sep 7, 2022Sep 7, 2022
LAB-SPRING-2022
Public
LAB-MEETING SPRING 2022
2•0•0•0•Updated Apr 28, 2022Apr 28, 2022
G2F_RESOURCES
Public
R
•0•1•0•0•Updated Mar 21, 2022Mar 21, 2022
LAB-FALL-2021
Public
0•1•0•0•Updated Jan 13, 2022Jan 13, 2022
GWASExplorer
Public
Explore Results from Genome-Wide Association Analyses
R
•
Other
•1•2•0•0•Updated Jun 28, 2021Jun 28, 2021
LAB-SUMMER-2021
Public
0•0•0•0•Updated Jun 4, 2021Jun 4, 2021
LAB-SPRING-2021
Public
0•0•0•0•Updated Apr 23, 2021Apr 23, 2021
LAB-FALL-2020
Public
0•0•0•0•Updated Dec 11, 2020Dec 11, 2020
BEDMatrixCExt
Public
Using BEDMatrix at the C level
C
•
BSD Zero Clause License
•0•0•0•0•Updated Dec 4, 2020Dec 4, 2020
website
Public
Simpler alternative to quantgen.github.io
HTML
•0•0•0•0•Updated Nov 7, 2020Nov 7, 2020
plotlyman
Public
Create Manhattan plots using Plotly
R
•
Other
•1•2•0•0•Updated Oct 25, 2020Oct 25, 2020
RIntro
Public
0•2•0•0•Updated Sep 21, 2020Sep 21, 2020
LAB-SUMMER-2020
Public
R
•2•1•0•0•Updated Sep 9, 2020Sep 9, 2020
symDMatrix
Public
Partitioned Symmetric Matrices
r genomics genetics r-pkg cran
R
•
Other
•0•2•1•0•Updated Aug 2, 2020Aug 2, 2020
MTM
Public
Multivariate Gaussian Models for Genomic and Pedigree Data
r-pkg r
R
•
Other
•6•12•0•0•Updated May 23, 2020May 23, 2020
LinkedMatrix
Public
Column-Linked and Row-Linked Matrices
r r-pkg cran
R
•
Other
•1•2•0•0•Updated May 22, 2020May 22, 2020
LAB-SPRING-2020
Public
1•0•0•2•Updated Apr 13, 2020Apr 13, 2020
LAB-SPRING-2019
Public
0•0•0•0•Updated Jan 14, 2020Jan 14, 2020
LAB-FALL-2019
Public
1•0•0•0•Updated Jan 14, 2020Jan 14, 2020
LAB-FALL-2018
Public
1•0•0•0•Updated Nov 27, 2018Nov 27, 2018
LAB-SPRING-2018
Public
3•0•0•0•Updated May 8, 2018May 8, 2018
HPCC
Public
0•1•1•0•Updated Mar 13, 2018Mar 13, 2018