Repositories list

• hpc-in-a-day

  Public archive
  Python

  •

  Other

  •0•0•0•0•Updated Dec 10, 2018Dec 10, 2018

• ilifu-demo-nov18

  Public archive
  Demonstration of virtual cluster and Galaxy deploy on Ilifu cloud

  HCL

  •

  MIT License

  •1•0•0•0•Updated Nov 20, 2018Nov 20, 2018

• ansible-role-slurm-drmaa

  Public archive
  Draft role for ensuring that DRMAA module for Slurm is installed

  MIT License

  •0•0•0•0•Updated Oct 24, 2018Oct 24, 2018

• sanbi-basic-server

  Public archive
  SANBI server setup with authentication and NFS automounts

  Shell

  •0•0•0•0•Updated Aug 1, 2018Aug 1, 2018

• ansible-openstack-vm-cephfs

  Public archive
  An Ansible role to mount the SANBI CephFS in SANBI OpenStack VMs

  1•0•0•0•Updated Jul 16, 2018Jul 16, 2018

• ansible_playbooks

  Public archive
  Ansible playbooks used at SANBI

  Shell

  •3•0•0•0•Updated Feb 28, 2018Feb 28, 2018

• s_bvc_pipeline

  Public archive
  Stellenbosch University Variant Calling Pipeline

  bioinformaticspipelineanalysis+ 7python-scriptbioinformatics-pipelinevariant-callingvariantbioinformatics-analysisturbeculosisstellensbosch

  C

  •

  Apache License 2.0

  •0•0•0•0•Updated Feb 13, 2018Feb 13, 2018

• ansible-galaxy-ctb-tools

  Public archive
  Ansible playbook for Galaxy Tools

  Apache License 2.0

  •0•0•0•0•Updated Feb 7, 2018Feb 7, 2018

• ansible-galaxy-envmodules-sanbi-

  Public archive
  Ansible role to integrate Galaxy with SANBI's Environment Modules setup

  GNU General Public License v3.0

  •1•0•0•0•Updated Feb 2, 2018Feb 2, 2018

• ansible-galaxy

  Public archive
  An Ansible role for managing a Galaxy (http://galaxyproject.org) server.

  Python

  •74•0•0•0•Updated Feb 2, 2018Feb 2, 2018

• ansible-galaxy-sge-sanbi

  Public archive
  Ansible role for connecting to the SGE Cluster in SANBI

  ansiblegalaxysge-cluster

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 1, 2018Feb 1, 2018

• tools-iuc

  Public archive
  Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission

  Python

  •

  MIT License

  •436•0•0•0•Updated Jan 25, 2018Jan 25, 2018

• tree2neo

  Public archive
  Tree2neo is a command line tool to import Newick tree (nhx) files to neo4j database

  pythonbioinformaticsneo4j+ 4fastapy2neoete3combattb

  Python

  •

  GNU General Public License v3.0

  •1•0•1•0•Updated Oct 20, 2017Oct 20, 2017

• docker_tb_profiler

  Public archive
  Docker for the TB profiler

  dockercombattbsanbi+ 1tbprofiler

  0•0•0•0•Updated Aug 29, 2017Aug 29, 2017

• app-baobab

  Public archive
  Baobab LIMS

  Python

  •0•0•0•0•Updated Jul 19, 2017Jul 19, 2017

• conda_recipes

  Public archive
  conda recipes for tools not aimed at conda-forge or bioconda

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Jun 26, 2017Jun 26, 2017

• galaxy

  Public archive
  SANBI Galaxy (Deployed into SANBI servers): Data intensive science for everyone.

  galaxygalaxy-projectgalaxy-docker+ 2sanbisanbi-galaxy

  Python

  •

  Other

  •1k•0•0•0•Updated Jun 13, 2017Jun 13, 2017

• h3acatalog

  Public archive
  A catalog project for H3Africa.

  JavaScript

  •1•0•0•0•Updated May 12, 2017May 12, 2017

• intro_to_computing_SANBI_2017

  Public archive
  Python

  •

  Other

  •0•0•0•0•Updated Feb 26, 2017Feb 26, 2017

• combattb_queue

  Public archive
  A Celery based queue module to use with combattb project

  redisqueuerabbitmq+ 3celerycelery-taskcombattb

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Feb 24, 2017Feb 24, 2017

• runbeast

  Public archive
  scripts for running BEAST

  Shell

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Feb 8, 2017Feb 8, 2017

• tools-devteam

  Public archive
  Contains a set of Galaxy Tools mostly written by the Galaxy Team.

  Python

  •92•0•0•1•Updated Jan 1, 2017Jan 1, 2017

• ansible_cbt_gx_sanbi

  Public archive
  Galaxy Ansible Playbook for local SANBI Installations

  sanbiteam-awesomeansible+ 4playbookgalaxygalaxy-ansible-playbooksanbi-galaxy

  0•0•0•0•Updated Oct 21, 2016Oct 21, 2016

• ansible_cbt_gx_tools

  Public archive
  Galaxy Tools Ansible Playbook for Combat TB Project

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 28, 2016Sep 28, 2016

• ansible-galaxy-pam-auth-sanbi

  Public archive
  Install PAM auth configuration for Galaxy (SANBI setup)

  1•0•0•0•Updated Sep 21, 2016Sep 21, 2016

• galaxy-tools-playbook

  Public archive
  A ready-to-use Ansible playbook for the Galaxy Tools role

  MIT License

  •9•0•0•0•Updated Sep 21, 2016Sep 21, 2016

• irods_docker

  Public archive
  Shell

  •2•1•0•0•Updated Sep 20, 2016Sep 20, 2016

• 2016-08-29-UWCswc

  Public archive
  HTML

  •

  Other

  •1•0•0•0•Updated Sep 5, 2016Sep 5, 2016

• GCC2016

  Public archive
  SANBI repository for Galaxy Community Conference 2016

  Shell

  •

  Other

  •1•0•0•0•Updated Jun 29, 2016Jun 29, 2016

• GCC2016lightningtalk

  Public archive
  Lightning talk for GCC2016

  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Jun 29, 2016Jun 29, 2016