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    7 repositories

    • basic-uq-hpc-scripts

      Public
      A collection of scripts for processing calcium imaging data using the University of Queenslands HPC infrastructure.
      Python
      •0•0•0•0•Updated Jan 18, 2023Jan 18, 2023

    • hpc_pipeline

      Public
      Set of tools for automatically restarting processing jobs on hpc clusters
      Python
      •0•1•0•0•Updated Nov 23, 2022Nov 23, 2022

    • post_pipeline_analysis

      Public
      This repository holds all scripts relevant to loading/visualising and analysis of data coming out of the SPIM HPC pipeline
      MATLAB
      •0•0•0•0•Updated Nov 2, 2022Nov 2, 2022

    • suite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •241•0•0•0•Updated Oct 26, 2021Oct 26, 2021

    • XimeaCamera

      Public
      Bonsai node. Generates a sequence of images acquired from the specified Ximea camera.
      C#
      •
      MIT License
      •1•0•0•0•Updated Jun 22, 2021Jun 22, 2021

    • Brainwide_auditory_processing

      Public
      Set of functions, scripts and notebooks used in the brain-wide auditory processing project
      spatial-analysiscalcium-imagingzebrafish
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Dec 15, 2020Dec 15, 2020

    • NegativeCalciumResponses

      Public
      Jupyter Notebook
      •1•1•0•0•Updated Nov 13, 2020Nov 13, 2020