Repositories list

• spicyR

  Public
  R

  •4•8•8•0•Updated Nov 11, 2024Nov 11, 2024

• spicyWorkBook

  Public
  HTML

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• SpatialSimbench_website

  Public
  JavaScript

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• scdneySpatial_BiocAsia2024

  Public
  scdney spatial workshop for ABACBS 2024

  Dockerfile

  •

  Other

  •2•0•1•1•Updated Nov 7, 2024Nov 7, 2024

• BioCAsia_2024_wSIR

  Public
  Dockerfile

  •

  Other

  •2•0•1•0•Updated Nov 7, 2024Nov 7, 2024

• lisaClust

  Public
  R

  •1•3•5•0•Updated Nov 6, 2024Nov 6, 2024

• ABACBS2024_EMCR_Hackathon_Spatial_Biology

  Public
  Repository around EMCR Hackathon at ABACBS 2024 Conference

  HTML

  •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

• ClassifyR

  Public
  A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing

  R

  •5•1•0•0•Updated Nov 4, 2024Nov 4, 2024

• clustSIGNAL_workshop

  Public
  Spatial transcriptomics data analysis – spatially-aware clustering with clustSIGNAL

  Dockerfile

  •

  Other

  •1•0•0•0•Updated Nov 3, 2024Nov 3, 2024

• BenchHub

  Public
  R

  •

  Other

  •0•0•4•1•Updated Nov 3, 2024Nov 3, 2024

• SpatialSimBench

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Nov 2, 2024Nov 2, 2024

• clustSIGNAL

  Public
  clustering of Spatially Informed Gene expression with Neighbourhood Adapted Learning

  R

  •0•2•0•0•Updated Oct 31, 2024Oct 31, 2024

• SpatialSimbenchQuartoOJS

  Public
  JavaScript

  •0•0•0•0•Updated Oct 30, 2024Oct 30, 2024

• CLUEY

  Public
  R

  •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

• Statial

  Public
  rsingle-cell

  R

  •1•4•1•0•Updated Oct 27, 2024Oct 27, 2024

• SpatialUtils

  Public
  Utility functions for spatial omics data

  R

  •

  MIT License

  •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

• SpatialFeatures

  Public
  An R package to extract features from singcell spatial genomics

  R

  •0•1•0•0•Updated Oct 18, 2024Oct 18, 2024

• wSIR

  Public
  Weighted Sliced Inverse Regression for spatial omics data analysis

  R

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• spicyWorkflow

  Public
  Perform spatial analysis of in situ cytometry data in R

  spatial-statistics

  GNU General Public License v3.0

  •0•4•4•0•Updated Oct 16, 2024Oct 16, 2024

• SpatioMark

  Public
  Figure Generation for SpatioMark Manuscript

  R

  •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

• StabMap

  Public
  Mosaic single cell data integration using non-overlapping features

  R

  •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

• CellSPA

  Public
  Cell Segmentation Performance Assessment

  R

  •1•4•3•0•Updated Oct 15, 2024Oct 15, 2024

• GHIST

  Public
  Python

  •

  GNU General Public License v3.0

  •0•8•1•0•Updated Oct 3, 2024Oct 3, 2024

• HKU_SCDNEY_2024

  Public
  workshop

  HTML

  •

  MIT License

  •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• SpatialDatasets

  Public
  R

  •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

• iDAS

  Public
  Interpretable Differential Abundance signature

  differential-expressionsinglecellidas+ 1differential-abundance

  R

  •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• sc_bench_benchmark_dashboard

  Public
  JavaScript

  •0•0•0•0•Updated Aug 30, 2024Aug 30, 2024

• scFeatures

  Public
  R

  •2•10•9•0•Updated Aug 26, 2024Aug 26, 2024

• packageHeader

  Public
  Headers for package vignettes

  HTML

  •0•0•0•0•Updated Aug 26, 2024Aug 26, 2024

• hRUV

  Public
  R

  •

  GNU General Public License v3.0

  •3•4•1•0•Updated Aug 16, 2024Aug 16, 2024