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@bbcf Bioinformatics and Biostatistics Core Facility

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    20 repositories

    • bbcfutils

      Public
      Collection of stand-alone tools
      Python
      •4•3•3•0•Updated Nov 16, 2018Nov 16, 2018

    • bbcflib

      Public
      Internal utility modules for the BBCF
      Python
      •
      GNU General Public License v3.0
      •4•7•0•0•Updated Nov 16, 2018Nov 16, 2018

    • biorepo_ror4

      Public
      A new version of biorepo on Ruby on Rails $
      Ruby
      •0•0•0•0•Updated Sep 30, 2016Sep 30, 2016

    • bsPlugins

      Public
      Plugin scripts for genomic data, used by bioscript or directly in python
      Python
      •
      GNU General Public License v3.0
      •4•1•0•0•Updated Jun 16, 2016Jun 16, 2016

    • bioscript_ruby

      Public
      Ruby
      •
      Other
      •0•0•0•0•Updated Jun 10, 2016Jun 10, 2016

    • rnacounter

      Public
      Counter of HTS reads
      Python
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated May 12, 2016May 12, 2016

    • swisspalm

      Public
      S-palmitoylation database
      HTML
      •2•2•1•0•Updated Jun 29, 2015Jun 29, 2015

    • bein

      Public
      Miniature LIMS and workflow manager for bioinformatics
      Python
      •
      GNU General Public License v3.0
      •7•1•0•0•Updated Apr 14, 2015Apr 14, 2015

    • jbrowsor

      Public
      Ruby on rails application for jbrowse
      Ruby
      •0•2•0•0•Updated Mar 8, 2015Mar 8, 2015

    • biorepo

      Public
      BioRepo is a LIMS for HTS data @ EPFL - Vital-IT
      JavaScript
      •2•1•0•0•Updated Feb 18, 2015Feb 18, 2015

    • bs

      Public
      BioScript is a web application which have the purpose to build a common interface for job processing.
      Python
      •2•1•0•0•Updated Oct 2, 2014Oct 2, 2014

    • pyDNase

      Public
      Python module for the easy handling and analysis of DNase-seq data
      C
      •
      GNU General Public License v3.0
      •24•0•0•0•Updated Jul 10, 2014Jul 10, 2014

    • gless

      Public
      graphical "less" for track files
      JavaScript
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Jun 12, 2014Jun 12, 2014

    • tw2.bs

      Public
      Toscawidget widgets for Bioscript
      Python
      •0•0•0•0•Updated Oct 29, 2013Oct 29, 2013

    • pyrotrfid

      Public
      This project is a pipeline to perform digital TRFLP.
      Python
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 7, 2013Oct 7, 2013

    • jbrowse

      Public
      Modern JavaScript-based Genome Browser
      JavaScript
      •
      Other
      •199•0•0•0•Updated Jul 16, 2013Jul 16, 2013

    • pygdv

      Public
      A user friendly genome browser
      JavaScript
      •1•2•0•0•Updated Apr 18, 2013Apr 18, 2013

    • bedtools

      Public
      A powerful toolset for genome arithmetic.
      C++
      •
      GNU General Public License v2.0
      •85•2•0•0•Updated Mar 20, 2013Mar 20, 2013

    • turbotequila

      Public
      TurboTequila is a starter for a Turbogears application with Tequila already enabled
      Python
      •1•1•0•0•Updated Apr 23, 2012Apr 23, 2012

    • gdv

      Public
      Genome Data Viewer
      Java
      •1•1•8•0•Updated Sep 21, 2011Sep 21, 2011