Bio IO Devs

All

16 repositories

bioio-base
Public
Typing, base classes, and more for BioIO projects.
xarray scientific-computing dask image-metadata microscopy scientific-formats bioio python
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•2•2•Updated Nov 7, 2024Nov 7, 2024
bioio
Public
Image reading, metadata management, and image writing for Microscopy images in Python
python xarray scientific-computing dask image-metadata microscopy scientific-formats aicsimageio
Python
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BSD 3-Clause "New" or "Revised" License
•4•53•13•0•Updated Oct 30, 2024Oct 30, 2024
bioio-ome-tiff
Public
A BioIO reader plugin for reading Tiff files in the OME format.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
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BSD 3-Clause "New" or "Revised" License
•1•1•1•0•Updated Oct 9, 2024Oct 9, 2024
bioio-tifffile
Public
A BioIO reader plugin for reading TIFFs using Tifffile
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
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BSD 3-Clause "New" or "Revised" License
•2•0•3•0•Updated Sep 25, 2024Sep 25, 2024
bioio-bioformats
Public
A BioIO reader plugin for reading bioformats formatted images.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
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GNU General Public License v3.0
•0•0•1•3•Updated Sep 25, 2024Sep 25, 2024
bioio-sldy
Public
A BioIO reader plugin for reading 3i slidebook (SLDY) images
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•1•0•Updated Sep 20, 2024Sep 20, 2024
bioio-ome-zarr
Public
A BioIO reader plugin for reading Zarr files in the OME format.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
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BSD 3-Clause "New" or "Revised" License
•2•0•2•1•Updated Aug 20, 2024Aug 20, 2024
bioio-czi
Public
A BioIO reader plugin for reading CZI files.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
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GNU General Public License v3.0
•1•2•6•1•Updated Jul 29, 2024Jul 29, 2024
bioio-imageio
Public
A BioIO reader plugin for reading simple image and movie formats
xarray scientific-computing dask image-metadata microscopy scientific-formats bioio python
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•1•1•Updated Jul 23, 2024Jul 23, 2024
bioio-dv
Public
A BioIO reader plugin for reading Digital Video (DV) files.
python scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Mar 1, 2024Mar 1, 2024
bioio-tiff-glob
Public
A BioIO reader plugin for reading Tiff Glob images.
python scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•1•0•Updated Mar 1, 2024Mar 1, 2024
bioio-nd2
Public
A BioIO reader plugin for reading ND2 images.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•1•0•Updated Mar 1, 2024Mar 1, 2024
bioio-lif
Public
A BioIO reader plugin for reading LIF (Leica Image File) images.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
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GNU General Public License v3.0
•0•0•3•0•Updated Mar 1, 2024Mar 1, 2024
cookiecutter-bioio-reader
Public
A cookiecutter template for creating a new BioIO file format reader plugin.
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Mar 1, 2024Mar 1, 2024
bioio-ome-tiled-tiff
Public
A BioIO reader plugin for reading tiled tiff files in the OME format.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Mar 1, 2024Mar 1, 2024
.github
Public
0•0•0•0•Updated Nov 20, 2023Nov 20, 2023