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    82 repositories

    • osca-workbench

      Public
      Single-cell RNAseq materials derived from the 2023 ISMB OSCA workshop in the carpentries workbench format.
      rna-seqrenglishbioconductorlessonsingle-cell
      R
      •
      Other
      •1•2•11•0•Updated Nov 12, 2024Nov 12, 2024

    • cadence

      Public
      A project for creating meeting schedules.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Nov 12, 2024Nov 12, 2024

    • workbench-python-workshop

      Public
      8-hour workshop introducing Python using The Carpentries new workbench template.
      Other
      •0•1•0•0•Updated Nov 12, 2024Nov 12, 2024

    • ProteinGymR

      Public
      Programmatic access to ProteinGym datasets in R/Bioconductor
      R
      •0•0•3•0•Updated Nov 4, 2024Nov 4, 2024

    • MouseAgingData

      Public
      Mouse aging multi-omics project with Rubin Lab
      R
      •0•1•1•0•Updated Nov 4, 2024Nov 4, 2024

    • scDiagnostics

      Public
      Diagnostic functions to assess the quality of cell type annotations in single-cell RNA-seq data
      R
      •2•3•6•0•Updated Oct 30, 2024Oct 30, 2024

    • Git-Backed-Content

      Public
      This tutorial demonstrates how to deploy a Shiny app on Posit Connect servers with pins to write and read data on Posit Connect.
      R
      •1•1•0•0•Updated Oct 29, 2024Oct 29, 2024

    • HarvardInovalonUserGuide

      Public
      User guide for Harvard's Inovalon resources.
      R
      •
      MIT License
      •2•4•0•0•Updated Oct 28, 2024Oct 28, 2024

    • AlphaMissenseR

      Public
      Accessing AlphaMissense Data Resources in R
      R
      •1•0•2•0•Updated Oct 16, 2024Oct 16, 2024

    • CyCIFData

      Public
      Collection of public CyCIF datasets
      R
      •
      MIT License
      •1•1•0•0•Updated Sep 30, 2024Sep 30, 2024

    • scCalibratoR

      Public
      scCalibratoR is an R/Bioconductor package designed to address challenges in single-cell RNA sequencing (scRNA-seq) analysis, including batch effect correction and annotation refinement.
      0•0•0•0•Updated Sep 20, 2024Sep 20, 2024

    • computervision

      Public
      Everything to get started with computer vision
      computer-visiondetectionclassificationsegmentation
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•4•1•0•Updated Sep 15, 2024Sep 15, 2024

    • periomodel

      Public
      Estimating Periodontal Stability Using Computer Vision
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • git_backed_test

      Public
      0•0•0•0•Updated Sep 10, 2024Sep 10, 2024

    • immunology-bootcamp-2023

      Public
      Materials for Systems Immunology R Bootcamp Fall 2023
      Lua
      •
      Other
      •1•0•0•0•Updated Aug 19, 2024Aug 19, 2024

    • .github

      Public
      0•0•0•0•Updated Aug 7, 2024Aug 7, 2024

    • gwasCatSearch

      Public
      tooling for semantic search of NHGRI GWAS catalog
      gwasshinyontologybioconductorcorpustoolstext2termontoproc
      R
      •
      Creative Commons Attribution 4.0 International
      •1•2•0•0•Updated Aug 6, 2024Aug 6, 2024

    • ontology-mapper

      Public
      a tool for mapping free-text descriptions of entities to ontology terms
      owlontologydata-cleaningontology-searchontology-servicesfair-datafair-principlesowlready2metadata-cleaningontology-mapping
      Python
      •
      MIT License
      •3•14•0•0•Updated Jul 30, 2024Jul 30, 2024

    • scDiagnosticsBioc2024Demo

      Public
      This repository contains the files for the package demonstration of scDiagnostics presented at the Bioconductor 2024 conference.
      Dockerfile
      •
      Other
      •2•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • scConform

      Public
      Uncertainty quantification for cell type annotation using conformal inference
      R
      •0•4•2•0•Updated Jul 25, 2024Jul 25, 2024

    • embeddingsAnalytics

      Public
      This repository contains toolkits for analyzing embeddings data through dimension reduction techniques and multivariate analysis, facilitating insights into high-dimensional data structures.
      R
      •0•0•0•0•Updated Jul 20, 2024Jul 20, 2024

    • ccb_ml_ws

      Public
      HTML
      •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

    • MerfishData

      Public
      Collection of public MERFISH datasets
      R
      •2•1•2•0•Updated Jun 28, 2024Jun 28, 2024

    • bioc-chat-bot-testing

      Public
      Testing for Bioconductor chatbots
      Jupyter Notebook
      •0•0•2•0•Updated Jun 25, 2024Jun 25, 2024

    • unbalanced-data-example

      Public
      This repository contains code to illustrate the effects of unbalanced data on classification models, including poor optimization, Hessian matrix issues, and biased model performance.
      R
      •0•1•0•0•Updated Jun 25, 2024Jun 25, 2024

    • phonto

      Public
      PHenome - PHenome ONTOlogy for NHANES
      R
      •
      Creative Commons Attribution 4.0 International
      •1•4•8•0•Updated Jun 22, 2024Jun 22, 2024

    • stransevalr

      Public
      Sentence transformer evaluation in R
      R
      •
      Other
      •0•0•0•0•Updated Jun 21, 2024Jun 21, 2024

    • BioPlexPy

      Public
      Python-side access to PPI data from Gygi lab
      Jupyter Notebook
      •
      MIT License
      •1•3•3•1•Updated Jun 18, 2024Jun 18, 2024

    • ollama-r

      Public
      R library to query language models locally with Ollama
      R
      •
      Other
      •9•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • mmsci-bootcamp-2023

      Public
      Materials for MMSCI R/Bioinformatics Workshop 2023
      HTML
      •
      Other
      •0•0•0•0•Updated May 29, 2024May 29, 2024