Repositories list

• gene-platform

  Public
  JavaScript

  •

  MIT License

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• curated-bulk-rnaseq-gene-expression

  Public
  Bulk RNA-seq data curated for the GENE Platform: https://github.com/fogg-lab/gene-platform

  Jupyter Notebook

  •0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

• gsea-rs

  Public
  WebAssembly-ready Rust implementation of preranked Gene Set Enrichment Analysis (GSEA) distilled from GSEApy (https://github.com/zqfang/GSEApy).

  Rust

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Sep 15, 2024Sep 15, 2024

• gene-platform-utils

  Public
  Python

  •0•0•0•0•Updated Sep 15, 2024Sep 15, 2024

• tissue-model-analysis-tools

  Public
  An application for automated high-throughput analysis of cancer and endothelial cell dynamics in hydrogels.

  machine-learningcomputer-visiontopological-data-analysis+ 1microscopy-image-analysis

  Python

  •

  Other

  •0•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• gene-platform-archive

  Public archive
  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 15, 2024Jul 15, 2024

• transcriptomic-data-integrator

  Public archive
  A Python package to search, retrieve, and prepare gene expression data from Gene Expression Omnibus and Genomic Data Commons.

  transcriptomics

  Python

  •

  MIT License

  •0•0•0•0•Updated Jul 13, 2024Jul 13, 2024

• ecm-chemoresistance-rnaseq-analysis

  Public
  Python

  •

  MIT License

  •0•0•1•0•Updated Jul 11, 2024Jul 11, 2024

• tissue-model-analysis-tools-data

  Public
  Example data for the tissue model analysis tools package

  1•0•0•0•Updated Jun 27, 2024Jun 27, 2024

• engineering-high-throughput-screening-platforms-of-cervical-cancer

  Public
  Python

  •0•0•0•0•Updated Jun 20, 2024Jun 20, 2024

• Healthy-Endometrium

  Public
  Python

  •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

• Endometrial-Cancer

  Public
  Python

  •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

• Cervical-Dysplasia

  Public
  Images collected for 3D in vitro assay

  Python

  •0•0•0•0•Updated Jan 4, 2024Jan 4, 2024

• fogg-lab.github.io

  Public
  HTML

  •0•0•0•0•Updated Dec 6, 2023Dec 6, 2023

• characterizing-ecm-transcriptome-of-endometriosis

  Public
  Python

  •

  MIT License

  •0•1•0•0•Updated Oct 18, 2023Oct 18, 2023

• interactive-segmentation

  Public
  Python

  •

  Apache License 2.0

  •1•1•2•0•Updated Mar 25, 2023Mar 25, 2023

• The-optimization-of-poly-vinyl--alcohol-alginate-beads

  Public
  MATLAB

  •0•0•0•0•Updated Feb 16, 2023Feb 16, 2023