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    90 repositories

    • MultiOmicsCellSim

      Public
      Cell Simulator to map parametrical distributions into various modalities
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Nov 4, 2024Nov 4, 2024

    • featureforest

      Public
      A napari plugin for segmentation using features from vision transformers
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•7•1•0•Updated Nov 1, 2024Nov 1, 2024

    • labkit-ui

      Public
      Advanced Tool for Labeling And Segmentation
      Java
      •
      BSD 2-Clause "Simplified" License
      •21•33•58•3•Updated Oct 21, 2024Oct 21, 2024

    • uSplit

      Public
      Python
      •
      MIT License
      •3•6•3•0•Updated Oct 17, 2024Oct 17, 2024

    • MicroSSIM

      Public
      Range Invariant SSIM
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•1•0•Updated Sep 21, 2024Sep 21, 2024

    • cellpose-bmz-wrapper

      Public
      A wrapper to pack cellpose model for bioimage model zoo
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • labkit-pixel-classification

      Public
      Java
      •
      BSD 2-Clause "Simplified" License
      •6•6•2•0•Updated Aug 29, 2024Aug 29, 2024

    • bioimageio-uploader

      Public
      Svelte
      •2•0•0•0•Updated Aug 28, 2024Aug 28, 2024

    • AI4LifeSubmissions

      Public
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated Jul 30, 2024Jul 30, 2024

    • denoiSplit

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jul 12, 2024Jul 12, 2024

    • git_playground

      Public
      0•0•0•0•Updated Jun 19, 2024Jun 19, 2024

    • napari-n2v

      Public
      A self-supervised denoising algorithm.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•24•13•0•Updated Apr 6, 2024Apr 6, 2024

    • n2v

      Public
      This is the implementation of Noise2Void training.
      Python
      •
      Other
      •111•406•21•3•Updated Apr 6, 2024Apr 6, 2024

    • cryoCARE_pip

      Public
      PIP package of cryoCARE
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •16•26•14•1•Updated Apr 2, 2024Apr 2, 2024

    • core-bioimage-io-python

      Public
      Python libraries for loading, running and packaging bioimage.io models
      Jupyter Notebook
      •
      MIT License
      •21•0•0•0•Updated Mar 24, 2024Mar 24, 2024

    • EmbedSeg

      Public
      Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
      instance-segmentationtest-time-augmentationspatial-embeddingsdeep-learning
      Python
      •
      Other
      •23•112•10•0•Updated Feb 14, 2024Feb 14, 2024

    • core-bioimage-io-widgets

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•2•Updated Dec 11, 2023Dec 11, 2023

    • HDN

      Public
      This repository hosts the code for HDN (associated with the paper https://arxiv.org/pdf/2104.01374.pdf) for pixel and structured noise removal for microscopy and natural image datasets
      Python
      •
      Other
      •7•35•4•1•Updated Nov 22, 2023Nov 22, 2023

    • solvathon_sorting

      Public
      Sorting project(10)
      Jupyter Notebook
      •0•0•0•0•Updated Oct 12, 2023Oct 12, 2023

    • MAESTER

      Public
      Masked Autoencoder Guided Segmentation at Pixel Resolution
      Python
      •
      MIT License
      •6•0•0•0•Updated Oct 3, 2023Oct 3, 2023

    • labkit-command-line

      Public
      Labkit Command Line - Segment huge images on a cluster
      Java
      •
      BSD 2-Clause "Simplified" License
      •2•3•4•1•Updated Sep 25, 2023Sep 25, 2023

    • DenoiSeg

      Public
      Joint training of denoising and segmentation.
      Jupyter Notebook
      •
      Other
      •21•66•6•0•Updated Aug 29, 2023Aug 29, 2023

    • pn2v

      Public
      This is our implementation of Probabilistic Noise2Void
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •10•71•1•0•Updated Aug 28, 2023Aug 28, 2023

    • PPN2V

      Public
      Code Implementation for the publication "Fully Unsupervised Probabilistic Noise2Void"
      unsupervised-denoisingnoise-model
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •9•55•2•0•Updated Aug 28, 2023Aug 28, 2023

    • howto-collector

      Public
      Java
      •0•0•0•2•Updated Apr 14, 2023Apr 14, 2023

    • versioning_fiji

      Public
      Java
      •0•0•0•1•Updated Apr 14, 2023Apr 14, 2023

    • PyTr2d

      Public
      Python based Tracking in 2D
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Apr 12, 2023Apr 12, 2023

    • motile

      Public
      Multi-Object Tracker using Integer Linear Equations
      Python
      •
      MIT License
      •5•0•0•0•Updated Mar 24, 2023Mar 24, 2023

    • LabelEditor

      Public
      Java
      •
      BSD 2-Clause "Simplified" License
      •3•4•14•1•Updated Feb 11, 2023Feb 11, 2023

    • labkit-remote-drawing

      Public
      JavaScript
      •0•1•0•8•Updated Dec 10, 2022Dec 10, 2022