Repositories list

• ref-match-db

  Public
  A nextflow workflow to build referenceseeker DBs on the fly

  bioinformatics-pipelinephylogeneticsbacteria+ 3nf-corepathogenomicsnextflow-pipelines

  Nextflow

  •

  MIT License

  •0•1•0•0•Updated Oct 5, 2022Oct 5, 2022

• orkas

  Public
  A bacterial pathogen genomics workflow inspired by Nullarbor

  Nextflow

  •0•1•0•0•Updated Sep 21, 2022Sep 21, 2022

• phcue-qc

  Public
  A fast and simple summary of FASTQ files

  Rust

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 26, 2022Aug 26, 2022

• ph-datasets

  Public
  A Nextflow workflow to download standard datasets for public health

  benchmarkingdatabioinformatics+ 4nextflowstandardspublic-healthpathogen-genomics

  Nextflow

  •0•0•1•0•Updated Aug 25, 2022Aug 25, 2022

• phcue-ck

  Public
  Find FTP urls for FASTQ on ENA

  bioinformaticsfastq

  Rust

  •

  MIT License

  •1•1•3•0•Updated Aug 23, 2022Aug 23, 2022