ChrVis

Visualize your genome and analyse it ❤️

View Demo · Documentation · Report Bug · Request Feature

Table of Contents

• About the Project
  • Built With
• Getting Started
  • Prerequisites
  • Installation
• Contributing
• License
• Contact
• Acknowledgements

About The Project

ChrVis is web suite to analyse and Visualize HiC data with a simple to use and elegant user interface and workflow.

Built With

Completely with Python and Javascript and it's supporting libraries worth mentioning libraries and frameworks:

• Python
• Javascript

Getting Started

Follow the given commands to make and run app on to your local machine.

Prerequisites

• Python 3.7 or above
• WebGL enabled web browser
• Docker

Installation

Docker

git clone https:\\github.com\orionpax00\chrvis.git

cd chrvis

docker-compose build

docker exec -it chrvis bash

cd chrvis-server/

celery -A chrvis worker -l info

Contributing

Contributions are what make the open source community such an amazing place to be learn, inspire, and create. Any contributions you make are greatly appreciated.

1. Fork the Project
2. Create your Feature Branch (git checkout -b feature/AmazingFeature)
3. Commit your Changes (git commit -m 'Add some AmazingFeature)
4. Push to the Branch (git push origin feature/AmazingFeature)
5. Open a Pull Request

License

Distributed under the Apache License. See LICENSE for more information.

Contact

Durgesh Kumar - dkumar@ce.iitr.ac.in
るいす あうぐすと えいじ ながい - nagailae@hgc.jp
朴　聖俊 (ぱく そんじゅん) - sjpark@ims.u-tokyo.ac.jp

Project Link: https://github.com/orionpax00/ChrVis

Acknowledgements

• Python
• Javascript
• Threejs
• Sigmajs
• Django
• Networkx
• TadBit