Releases: oschwengers/referenceseeker
v1.8.0
v1.7.3
v1.7.1
This is a feature release providing:
- massively reduced database sizes due to compressed reference genomes
- allow for zipped input genomes
- new pre-compiled databases from GTDB and PLSDB
As well as:
- new tests
- move to Python 3.8 as default
As we currently have no infrastructure to test & debug the tool on MacOS, we skipped the integration tests on MacOS. Any suggestions/support is highly welcome.
v1.6.4
v1.6.3
This is just a minor patch to remove some debugging artifacts.
v1.6.2
This is a minor release fixing broken 3rd party dependencies in the share directory. This issue is masked within a BioConda environment.
v1.6.1
This is the first minor release after the JOSS publication.
We updated the pre-compiled RefSeq databases and fixed some minor typos and bugs.
v1.6
This release archives the to-be-published version 1.6 necessary for the JOSS publication.
In this release we:
- added a
CONTRIBUTING.md - added issue templates for bugs and features
- fixed some typos
v1.5
This release provides an exciting new feature:
ReferenceSeeker now supports the initialization of local, private & custom DBs and the fine grained import of local genomes - either into a fresh new DB or an existing public one.
Therefore, check the new referenceseeker_db command - more info in the readme DB section
Additionally, we:
- added a tiny mock DB as a test case -> assure your local installation works as expected!
- improved the documentation (readme)
- applied some code refactoring
- added PyTest-based unit tests
- implemented a GitHub Actions-based CI -> further code quality assurance
v1.4
This release introduces the bidirectional computation of ANI / conserved DNA values.
Just add the --bidirectional option.