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Gene aggregation #74

Merged
merged 16 commits into from
Jun 20, 2016
Merged

Gene aggregation #74

merged 16 commits into from
Jun 20, 2016

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pimentel
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Used in the sleuth preprint

pimentel and others added 16 commits November 6, 2015 09:16
Setup linter and cleanup code
temporarily disable filtering at gene level #vc

stash gene mode #vc

work in progress #vc

add functionality to filter by target id #vc

update aggregation #vc

comment out a section in aggregation #vc

deal with intersection #vc

first cut at empirical bayes #vc

fix small bug in empirical bayes #vc

testing out pmax #vc

empirical bayes and propagate filter #vc

norm by effective length

massive cleanup

more cleaning

refactor out check target mapping

remove filter by target_id

update warnings in check_target_mapping

more cleanup
@pimentel pimentel merged commit ed5ad30 into master Jun 20, 2016
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