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Bring ODGI to Bioconda #75

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subwaystation opened this issue Feb 3, 2020 · 8 comments · Fixed by #77
Closed

Bring ODGI to Bioconda #75

subwaystation opened this issue Feb 3, 2020 · 8 comments · Fixed by #77
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@subwaystation
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We are trying to bring ODGI to Bioconda. The latest problem indicated in bioconda/bioconda-recipes#18743 was that ODGI did not build because of it's sonLib dependency.
@ekg mentioned that it is not needed. Therefore, I will remove this dependency.
@subwaystation subwaystation self-assigned this Feb 3, 2020
This was referenced Feb 3, 2020
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@subwaystation
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@ekg Which python versions does odgi support?
I expect no 2.7?
But from 3.x?

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ekg commented Feb 3, 2020 via email

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subwaystation commented Feb 3, 2020 •
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We have a Linux build for our current conda branch @SilasK. For instructions please see bioconda/bioconda-recipes#18743 (comment).

@subwaystation subwaystation mentioned this issue Feb 3, 2020
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@JervenBolleman
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No point in trying to support 2.7 python with new code when BioPython etc. are dropping it.

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@ekg How about a release 0.2 after merging of #76? Then we can have a stable conda built and correspond the the bioconda rulebook.

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ekg commented Feb 5, 2020

https://github.com/vgteam/odgi/releases/tag/0.2

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Awesome, thanks!

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Tadaa!
https://anaconda.org/bioconda/odgi
There you go @SilasK.

@subwaystation subwaystation mentioned this issue Feb 6, 2020
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@ekg ekg closed this as completed in #77 Feb 6, 2020
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added bioconda badge pangenome/odgi
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@ekg @JervenBolleman @subwaystation