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Cannot find the target directory #83

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zshu-alt opened this issue Jun 5, 2023 · 2 comments
Closed

Cannot find the target directory #83

zshu-alt opened this issue Jun 5, 2023 · 2 comments

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@zshu-alt
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zshu-alt commented Jun 5, 2023

Hello, I have such an error in the process of running, showing RuntimeError: Cannot find the target directory: $HOME/database/xTea/xTea/xtea/genotyping/trained_model_ssc_py2_random_forest_two_category.pkl. But I'm sure the file exists and is readable and writable. My data is short read data and I hope to conduct Alu analysis. My log files and commands have been uploaded. I would be grateful if you could solve my problem.
run_xTEA_pipeline.txt
xTea.txt
alu_WGS.txt

@hzlnutspread
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Hi there @simoncchu I also have the exact same problem. There is a trained_model_ssc_py2_random_forest_two_category.pkl file that is generated but it is not a directory and I get the same error when running the pipeline through conda. Would be great to have this issue solved

@simoncchu
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Hi, if you use the github version, do you have the same issue?

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