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@pathogenwatch-oss

pathogenwatch-oss

Popular repositories

  1. vista vista Public

    The Pathogenwatch Vibrio cholerae genotyping tool

    Python 3

  2. website website Public

    The main website code for Pathogenwatch

    JavaScript 1

  3. typing-databases typing-databases Public

    The scripts for creating the typing database used by the MLST code.

    Shell 1

  4. amr-libraries amr-libraries Public

    The CGPS curated AMR libraries used by Pathogenwatch

  5. tasks tasks Public

    The Pathogenwatch task image build scripts.

    JavaScript

  6. mlst mlst Public

    The Pathogenwatch MLST/cgMLST assignment tool

    JavaScript

Repositories

Showing 10 of 21 repositories
  • mlst Public

    The Pathogenwatch MLST/cgMLST assignment tool

    JavaScript 0 0 0 0 Updated Jun 14, 2024
  • website Public

    The main website code for Pathogenwatch

    JavaScript 1 MIT 0 0 0 Updated Jun 10, 2024
  • poppunk2 Public
    Python 0 MIT 0 0 0 Updated Jun 3, 2024
  • typing-databases Public

    The scripts for creating the typing database used by the MLST code.

    Shell 1 0 0 0 Updated May 17, 2024
  • tasks Public

    The Pathogenwatch task image build scripts.

    JavaScript 0 0 0 0 Updated May 17, 2024
  • core-fp Public
    JavaScript 0 MIT 0 0 0 Updated Apr 18, 2024
  • cgmlst-clustering Public
    Go 0 MIT 0 0 0 Updated Apr 4, 2024
  • hclink Public

    Link Pathogenwatch cgMLST profile to Enterobase HierCC clusters

    Python 0 MIT 0 0 0 Updated Feb 13, 2024
  • amr-search Public

    The Pathogenwatch AMR genotyping and phenotype inference tool

    Java 0 MIT 1 0 0 Updated Sep 18, 2023
  • amr-libraries Public

    The CGPS curated AMR libraries used by Pathogenwatch

    0 MIT 0 0 0 Updated Sep 18, 2023
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