chira-1.4.3

Bugfix: sort the spliced alignments set so that each time the same alignment selected.

chira-1.4.2

Change the scoring scheme to multiplication

chira-1.4.1

Merge pull request #36 from pavanvidem/v1.4.1

Change scoring scheme from addition to multiplication. The final comb…

chira-1.4.0

Re-implement EM as per the paper

chira-1.3.7

Merge pull request #34 from pavanvidem/v1.3.7

bug fix: 1) print sequences even if there is no hybrid, 2) revert hyb…

chira-1.3.6

Merge pull request #33 from pavanvidem/v1.3.6

Bug fix: In few cases, interaction file had wrong hybrid sequences an…

chira-1.3.5

bug fix: consider cases if the sequence is NA

chira-1.3.4

-> Add more IntaRNA parameters in chira_extract.py
-> output complete dot bracket alignment which fixes the alignment in the visualization
-> add more information to interaction summary: tab separated loci positions, exact hybrid positions on loci, complete sequences and interacting sequences, full length dot-bracket of interaction, read count moved to first column
-> decrease the default em threshold to 0.1

chira-1.3.3

• Ignore blockbuster clusters. Merge overlapping blocks
• Report each locus pair only once in interaction summary
• Sort interaction summary by read count

chira-1.3.1

Merge pull request #27 from pavanvidem/v1.3.1

fix a bug with spliced reads inclusion