Home

About

phylogenize is a tool that allows users to link microbial genes to environments, accounting for phylogeny. More specifically, given community composition data, phylogenize links genes in microbial genomes to either microbial prevalence in, or specificity for, a given environment, while also taking into account an important potential confounder: the phylogenetic relationships between microbes. phylogenize comes with web, QIIME 2, and R interfaces.

The method is described fully in Bradley, Nayfach, and Pollard (2018).