Update residual-checking.Rmd

[ericward-noaa]

Added diagnostics for delta/presence-absence models: AUC, TSS

TSS addition motivated by discussion here:
#84

It'd be easy to turn the TSS code into a function if it's more broadly useful

[seananderson]

Thanks - can you add pROC to .github/workflows/pkgdown.yaml in the extra packages for web-only vignettes? And maybe remove the extra spaces in roc <- pROC::roc( actual_values, plogis(pred$est) )?

I'm trying to decide if this fits with the residual checking vignette given it doesn't involve residuals. Would the cross-validation vignette be a more natural place maybe adding a quick example of AUC on the cross-validation predictions?

[ericward-noaa]

• Deleted the spaces
• I was hoping to avoid another dependency on pROC, so I made both the chunks that used it not evaluated (only 1 was off before, hence the warning)
• I can go either way on using this here or in the cross validation. I think there's lots of examples of people using AUC on train or test data

[seananderson]

I've incorporated a version of this into the cross validation vignette, including an example of AUC in cross validation. I'll push it shortly.