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Mirror of Daniel Zilberman Lab's bioinformatics tools
Perl Shell
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DZLab-Tools
System-Wrapper @ eb9adf3
doc
lib
t
.gitignore
.gitmodules
_build.sh
assemble_from_agp.pl
assemble_genes_from_annotation.pl
average-partitions.pl
average_ends.pl
average_ends_new.pl
average_gff.pl
b2r.pl
bs-seq.pl
build_gff_score_table.pl
c2t.pl
cat_and_window.pl
cat_and_window.sh
check_methyl.pl
check_single-c.pl
chi2gff.pl
cmp_gff.pl
collapse_exons.pl
collapse_gff.pl
collect_align_stats.pl
combine-nuc-freqs.pl
compile_gff.pl
concat_fasta.pl
convert.pl
correlatePairedEnds.pl
countMethylation.pl
count_adjacencies.pl
count_c_in_bulk.pl
count_c_in_reads.pl
count_cases.pl
cross_match_to_gff.pl
dz_seqret.pl
dzlab-check.pl
dzlab-update.pl
eland2gff.pl
eland3_to_gff.pl
ends_analysis.pl
ends_analysis.sh
ensure_all_genes_present.pl
exon_count.pl
exon_filter.pl
expand_gff.pl
extract_column_gff.pl
extract_sequences.pl
fasta_bsrc.pl
fasta_motifs.pl
fasta_normalize.pl
fastq_trim.pl
filter_by_coord.pl
filter_ends.pl
filter_gff.pl
filter_reads_by_coord.pl
filter_repeats.pl
find_loci.pl
fisher_exact_test.pl
fq_all2std.pl
freq.sh
full_run.sh
g2a.pl
genome_diff.pl
genome_patch.pl
get_parse_JGI.pl
gff2eland.pl
gff2eland3.pl
gff2tsv.pl
gff_to_soft.pl
installer.nsi
intersect_lists.pl
make_intron_gff.pl
merge_freq.pl
merge_gff.pl
merge_sam.pl
merge_scaffs.pl
mutateSeq.pl
normalize.pl
normalize_gff.pl
nucleotide-freqs.pl
offset_coordinates.pl
overlaps_gff.pl
parent_imprinting.pl
parse_bowtie.pl
parse_c_files.pl
parse_ecker.pl
parse_eland.pl
parse_fasta.pl
parse_silkwork_gen.pl
partitioner.pl
plot_kde.pl
qseq2fastq.pl
qseq2fq.pl
ratio.pl
rcfas.pl
rename_feature.pl
replaceMutation.pl
replace_reads.pl
reverse_coords.pl
run_parent_imprinting.pl
seeker2gff.pl
simple_diff.pl
sort_gff.pl
split_gff.pl
split_on_mismatches.pl
split_on_mismatches_2.pl
split_ratio.pl
sub_finddups.pl
window_by_annotation.pl
window_genome.pl
window_gff.pl
window_gff_DEPRECATED.pl
window_gff_by_frequency.pl
window_gff_new.pl
xml_to_gff.pl
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