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Add input file for dbpr example
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‎categories/rosalind/Q5SLP9.txt

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ID SSB_THET8 Reviewed; 263 AA.
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AC Q5SLP9; Q70M05;
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DT 29-MAR-2005, integrated into UniProtKB/Swiss-Prot.
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DT 21-DEC-2004, sequence version 1.
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DT 04-FEB-2015, entry version 72.
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DE RecName: Full=Single-stranded DNA-binding protein {ECO:0000255|HAMAP-Rule:MF_00984};
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DE Short=SSB {ECO:0000255|HAMAP-Rule:MF_00984};
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GN Name=ssb; OrderedLocusNames=TTHA0244;
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OS Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579).
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OC Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae;
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OC Thermus.
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OX NCBI_TaxID=300852;
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RN [1]
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RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND SUBUNIT.
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RX PubMed=12368464;
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RA Dabrowski S., Olszewski M., Piatek R., Brillowska-Dabrowska A.,
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RA Konopa G., Kur J.;
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RT "Identification and characterization of single-stranded-DNA-binding
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RT proteins from Thermus thermophilus and Thermus aquaticus -- new
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RT arrangement of binding domains.";
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RL Microbiology 148:3307-3315(2001).
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RN [2]
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RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
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RA Perales C., Cava F., Berenguer J.;
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RT "One step beyond PCR and RT-PCR: the SSB protein from Thermus
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RT thermophilus.";
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RL Submitted (APR-2003) to the EMBL/GenBank/DDBJ databases.
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RN [3]
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RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
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RC STRAIN=HB8 / ATCC 27634 / DSM 579;
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RA Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y.,
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RA Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.;
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RT "Complete genome sequence of Thermus thermophilus HB8.";
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RL Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases.
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CC -!- FUNCTION: Plays an important role in DNA replication,
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CC recombination and repair. Binds to ssDNA and to an array of
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CC partner proteins to recruit them to their sites of action during
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CC DNA metabolism. {ECO:0000255|HAMAP-Rule:MF_00984}.
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CC -!- SUBUNIT: Homodimer. {ECO:0000269|PubMed:12368464}.
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CC -!- SIMILARITY: Contains 2 SSB domains. {ECO:0000255|HAMAP-
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CC Rule:MF_00984}.
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CC -----------------------------------------------------------------------
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CC Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
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CC Distributed under the Creative Commons Attribution-NoDerivs License
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CC -----------------------------------------------------------------------
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DR EMBL; AF079160; AAC28386.2; -; Genomic_DNA.
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DR EMBL; AJ564626; CAD92097.1; -; Genomic_DNA.
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DR EMBL; AP008226; BAD70067.1; -; Genomic_DNA.
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DR RefSeq; WP_011227803.1; NC_006461.1.
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DR RefSeq; YP_143510.1; NC_006461.1.
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DR PDB; 2CWA; X-ray; 1.96 A; A=1-263.
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DR PDBsum; 2CWA; -.
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DR ProteinModelPortal; Q5SLP9; -.
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DR SMR; Q5SLP9; 1-259.
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DR STRING; 300852.TTHA0244; -.
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DR EnsemblBacteria; BAD70067; BAD70067; BAD70067.
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DR GeneID; 3167973; -.
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DR KEGG; ttj:TTHA0244; -.
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DR PATRIC; 23955433; VBITheThe93045_0244.
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DR eggNOG; COG0629; -.
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DR HOGENOM; HOG000023350; -.
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DR KO; K03111; -.
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DR OMA; WRDLAEW; -.
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DR OrthoDB; EOG6M9F32; -.
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DR BioCyc; TTHE300852:GH8R-253-MONOMER; -.
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DR EvolutionaryTrace; Q5SLP9; -.
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DR Proteomes; UP000000532; Chromosome.
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DR GO; GO:0003697; F:single-stranded DNA binding; IEA:InterPro.
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DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
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DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
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DR GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
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DR Gene3D; 2.40.50.140; -; 2.
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DR HAMAP; MF_00984; SSB; 1.
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DR InterPro; IPR012340; NA-bd_OB-fold.
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DR InterPro; IPR000424; Primosome_PriB/ssb.
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DR InterPro; IPR011344; ssDNA-bd.
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DR PANTHER; PTHR10302; PTHR10302; 1.
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DR Pfam; PF00436; SSB; 2.
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DR SUPFAM; SSF50249; SSF50249; 2.
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DR TIGRFAMs; TIGR00621; ssb; 2.
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DR PROSITE; PS50935; SSB; 2.
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PE 1: Evidence at protein level;
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KW 3D-structure; Complete proteome; DNA damage; DNA recombination;
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KW DNA repair; DNA replication; DNA-binding; Reference proteome; Repeat.
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FT CHAIN 1 263 Single-stranded DNA-binding protein.
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FT /FTId=PRO_0000096150.
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FT DOMAIN 5 108 SSB 1. {ECO:0000255|HAMAP-Rule:MF_00984}.
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FT DOMAIN 128 227 SSB 2. {ECO:0000255|HAMAP-Rule:MF_00984}.
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FT MOTIF 258 263 Important for interaction with partner
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FT proteins. {ECO:0000255|HAMAP-
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FT Rule:MF_00984}.
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FT CONFLICT 93 93 R -> K (in Ref. 2; CAD92097).
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FT {ECO:0000305}.
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FT CONFLICT 241 241 V -> A (in Ref. 2; CAD92097).
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FT {ECO:0000305}.
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FT CONFLICT 260 260 E -> D (in Ref. 1 and 2). {ECO:0000305}.
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FT STRAND 5 16 {ECO:0000244|PDB:2CWA}.
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FT STRAND 19 22 {ECO:0000244|PDB:2CWA}.
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FT STRAND 28 39 {ECO:0000244|PDB:2CWA}.
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FT STRAND 49 59 {ECO:0000244|PDB:2CWA}.
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FT HELIX 60 64 {ECO:0000244|PDB:2CWA}.
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FT TURN 65 69 {ECO:0000244|PDB:2CWA}.
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FT STRAND 75 85 {ECO:0000244|PDB:2CWA}.
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FT STRAND 96 107 {ECO:0000244|PDB:2CWA}.
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FT STRAND 114 116 {ECO:0000244|PDB:2CWA}.
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FT STRAND 122 125 {ECO:0000244|PDB:2CWA}.
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FT STRAND 128 139 {ECO:0000244|PDB:2CWA}.
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FT STRAND 142 145 {ECO:0000244|PDB:2CWA}.
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FT STRAND 151 161 {ECO:0000244|PDB:2CWA}.
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FT STRAND 169 178 {ECO:0000244|PDB:2CWA}.
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FT HELIX 179 185 {ECO:0000244|PDB:2CWA}.
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FT STRAND 193 206 {ECO:0000244|PDB:2CWA}.
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FT STRAND 208 210 {ECO:0000244|PDB:2CWA}.
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FT STRAND 212 224 {ECO:0000244|PDB:2CWA}.
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SQ SEQUENCE 263 AA; 29882 MW; 7BD2BC31AE3B9214 CRC64;
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MARGLNRVFL IGALATRPDM RYTPAGLAIL DLTLAGQDLL LSDNGGEREV SWYHRVRLLG
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RQAEMWGDLL DQGQLVFVEG RLEYRQWERE GERRSELQIR ADFLDPLDDR GKERAEDSRG
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QPRLRAALNQ VFLMGNLTRD PELRYTPQGT AVARLGLAVN ERRQGAEERT HFVEVQAWRD
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LAEWAAELRK GDGLFVIGRL VNDSWTSSSG ERRFQTRVEA LRLERPTRGP AQAGGSRSRE
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VQTGGVDIDE GLEDFPPEEE LPF
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//

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