Beaulieu-Saucier Université de Montréal Pharmacogenomics Centre

Pinned repositories

1. genipe

   Genome-wide imputation pipeline

   Python 20 6

2. region-plot

   A tool to plot significant regions of GWAS

   Python 6 2

3. manhattan_generator

   Manhattan plot Generator

   Python 6 3

4. lambda

   A python script to compute genomic inflation factor

   Python

5. qqplot

   Tool to generate QQ plots.

   Python

6. genetest

   Python package for efficient genetic association analyses

   Python 3 2

• genetest

  Python package for efficient genetic association analyses
  bioinformatics gwas statistics genomics genetics regression-models phewas
  Python 3 2 Updated Oct 29, 2018

• beelinetools

  Beeline report toolkit
  Python 1 MIT Updated Oct 9, 2018

• genipe

  Genome-wide imputation pipeline
  bioinformatics genomics genetics
  Python 20 6 Updated Jul 23, 2018

• manhattan_generator

  Manhattan plot Generator
  bioinformatics genomics genetics plot
  Python 6 3 Updated Jul 19, 2018

• geneparse

  Clean interface to parse genotype files
  bioinformatics genomics genetics
  Python 1 1 MIT Updated Jul 18, 2018

• region-plot

  A tool to plot significant regions of GWAS
  bioinformatics genomics genetics plot
  Python 6 2 Updated May 10, 2018

• statgen.org

  StatGen website
  TeX Updated Feb 7, 2018

• spark-sge

  Python Updated Nov 3, 2017

• vcf2tped

  Convert a VCF to multiple TPEDs
  Python 1 MIT Updated Jan 12, 2017

• pgxsimulation

  Updated Oct 24, 2016

• metaskat_pipeline

  An automatic pipeline for a MetaSKAT analysis
  Python Updated Feb 5, 2016

• qqplot

  Tool to generate QQ plots.
  Python Updated Feb 4, 2016

• lambda

  A python script to compute genomic inflation factor
  Python Updated Jan 26, 2016

• pgx_dnaseq

  Automatic DNA sequencing pipeline
  Python 1 Updated Apr 7, 2015

• ref_finder

  Finds the reference (and alternative) allele in the reference genome
  Python 1 MIT Updated Feb 18, 2015

• variant_aware_fasta

  Generate variant aware fasta files.
  Python 1 MIT Updated Feb 11, 2015

• pymegablast

  A python wrapper for megablast
  Python 1 1 GPL-3.0 Updated Jan 23, 2015

• aa2snp

  Converts amino acid changes to SNPs (without warranty)
  Python 1 Updated Oct 24, 2014

• eventhub

  General purpose RESTful event processing service
  Scala 2 Apache-2.0 Updated Jul 23, 2014

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People

dahdahm Michel Dahdah

legaultmarc Marc-André Legault

lemieuxl Louis-Philippe Lemieux Perreault