Beaulieu-Saucier Université de Montréal Pharmacogenomics Centre

Repositories

• region-plot

  A tool to plot significant regions of GWAS

  bioinformatics genomics genetics plot
  Python 5 13 4 0 Updated Oct 13, 2020

• genetest

  Python package for efficient genetic association analyses

  bioinformatics gwas statistics genomics genetics regression-models phewas
  Python 2 3 9 0 Updated Sep 11, 2020

• geneparse

  Clean interface to parse genotype files

  bioinformatics genomics genetics
  Python MIT 1 2 4 0 Updated Aug 21, 2020

• manhattan_generator

  Manhattan plot Generator

  bioinformatics genomics genetics plot
  Python 7 19 1 1 Updated Jun 1, 2020

• genipe

  Genome-wide imputation pipeline

  bioinformatics genomics genetics
  Python 7 26 6 0 Updated Feb 27, 2020

• fastglm

  Forked from jaredhuling/fastglm

  Fast glm fitting via RcppEigen
  C++ 8 0 0 0 Updated May 21, 2019

• beelinetools

  Beeline report toolkit
  Python MIT 0 1 1 0 Updated Oct 9, 2018

• statgen.org

  StatGen website
  TeX 0 0 0 0 Updated Feb 7, 2018

• spark-sge
  Python 0 0 0 0 Updated Nov 3, 2017

• vcf2tped

  Convert a VCF to multiple TPEDs
  Python MIT 0 1 0 0 Updated Jan 12, 2017

• pgxsimulation
  0 0 0 0 Updated Oct 24, 2016

• metaskat_pipeline

  An automatic pipeline for a MetaSKAT analysis
  Python 0 0 0 0 Updated Feb 5, 2016

• qqplot

  Tool to generate QQ plots.
  Python 0 0 0 0 Updated Feb 4, 2016

• lambda

  A python script to compute genomic inflation factor
  Python 1 0 0 0 Updated Jan 26, 2016

• pgx_dnaseq

  Automatic DNA sequencing pipeline
  Python 0 1 0 0 Updated Apr 7, 2015

• ref_finder

  Finds the reference (and alternative) allele in the reference genome
  Python MIT 0 1 0 0 Updated Feb 18, 2015

• variant_aware_fasta

  Generate variant aware fasta files.
  Python MIT 0 1 0 0 Updated Feb 11, 2015

• pymegablast

  A python wrapper for megablast
  Python GPL-3.0 1 1 0 0 Updated Jan 23, 2015

• aa2snp

  Converts amino acid changes to SNPs (without warranty)
  Python 0 1 0 0 Updated Oct 24, 2014

• eventhub

  General purpose RESTful event processing service
  Scala Apache-2.0 0 2 3 0 Updated Jul 23, 2014