@apetkau apetkau released this Oct 17, 2018 · 164 commits to development since this release

Assets 4
  • [Workflow]: Fixed issue where duplicate filenames were found after running Galaxy workflow in newer Galaxy versions. (0.22.4)

@tom114 tom114 released this Aug 15, 2018 · 168 commits to development since this release

Assets 4
  • [UI]: Fixed bug where project samples page would freeze if there where numerous QC Issues.
  • [UI]: Fixed error where synchronizing sequence files could lead to truncated files without generating an error.

@tom114 tom114 released this Aug 8, 2018 · 182 commits to development since this release

Assets 4
  • [UI]: Fixed bug where all moved samples were locked. (0.22.2)
  • [UI/Developer]: Updated to lodash v4.17.10 to fix security issue. (0.22.2)

@tom114 tom114 released this Jul 23, 2018 · 190 commits to development since this release

Assets 4
  • [UI/Workflow]: Added option to disable workflows/analysis types from display in IRIDA using irida.workflow.types.disabled. (0.22.1)
  • [Developer]: Added wait when NCBI Uploader fails before retrying. (0.22.1)

@apetkau apetkau released this Jul 3, 2018 · 204 commits to development since this release

Assets 4
  • [UI]: Fixed bug where .xls file could not be uploaded through the file picker on the metadata upload page. (0.21.1)
  • [Workflow]: Added version 0.1.9 of the MentaLiST pipeline, which includes a fix for downloading cgMLST schemes and a distance matrix output.
  • [UI]: Fixed bug where concatenate files was POSTing to incorrect URL. (0.21.2)
  • [UI]: Fixed bug where SVG files could not be exported through the advanced visualization page. (0.21.2)
  • [UI]: Fixed bug where users could not share more than nine samples. (0.21.2)
  • [UI]: Moved the position of the notification system to top center.
  • [Workflow]: Added version 2.0.0 of a pipeline for running bio_hansel (version 2.0.0)
  • [Workflow]: Added version 0.3 of a pipeline for running SISTR which now makes use of Shovill for genome assembly.
  • [Workflow]: Updated SISTR pipeline to store the following additional fields in the metadata table: serogroup, O antigen, H1, H2, and alleles matching genome.
  • [UI]: Users can save analysis results to samples after pipeline is done in "Share Results" tab.
  • [UI]: Fixed bug where edit groups page would throw a server exception. (0.21.3)
  • [UI]: Hiding user page project list for non-admins.
  • [Workflow]: Fixed bug where auto updating metadata from analysis submission failed for non-admin user. (0.21.4)
  • [UI]: Fixed bug where admin dropdown menu was hidden behind sequencing run sub navigation.
  • [Developer]: Moved file processing chain outside of SequencingObjectService. It now runs as a scheduled task. This will help balance the processing load in multi-server deployments.
  • [UI]: Ensuring ROLE_SEQUENCER users get "Access Denied" for any attempted UI interactions.
  • [Developer]: Updated yarn to the current version.
  • [UI/Workflow]: Pipeline analysis output files are rendered in the same order as they appear in the pipeline irida_workflow.xml in the <outputs> XML element.
  • [Developer]: Can now specify which chromedriver to use in UI testing with -Dwebdriver.chrome.driver=/PATH/TO/chromedriver.
  • [UI]: Fixes slow Sample cart. Quicker saving of large selections of samples to cart (POST /cart/add/samples) and loading of existing cart Samples (GET /cart).

@apetkau apetkau released this May 17, 2018 · 541 commits to development since this release

Assets 4
  • [Workflow]: Fixed bug where auto updating metadata from analysis submission failed for non-admin user. (0.21.4)

@tom114 tom114 released this May 2, 2018 · 544 commits to development since this release

Assets 4
  • [UI]: Fixed bug where edit groups page would throw a server exception. (0.21.3)

@tom114 tom114 released this Apr 26, 2018 · 546 commits to development since this release

Assets 4
  • [UI]: Fixed bug where concatenate files was POSTing to incorrect URL. (0.21.2)
  • [UI]: Fixed bug where SVG files could not be exported through the advanced visualization page. (0.21.2)
  • [UI]: Fixed bug where users could not share more than nine samples. (0.21.2)

@tom114 tom114 released this Apr 18, 2018 · 564 commits to development since this release

Assets 4
  • [UI]: Fixed bug where .xls file could not be uploaded through the file picker on the metadata upload page. (0.21.1)

@apetkau apetkau released this Apr 6, 2018 · 566 commits to development since this release

Assets 4
  • [Workflow]: Added version 0.1 of a pipeline for runing MentaLiST (version 0.1.3).
  • [Workflow]: Added version 0.1 of a pipeline for runing Mash against the refseq database refseq_masher.
  • [UI]: Fixed bug where user could not cancel the upload of a sequence file on the Sample Files page.
  • [UI/Workflow]: Fixed bug where users could not submit large analyses due to an HTTP 414 "Request URI Too Long" error.
  • [Developer]: Removed old gulp dependencies from the package.json file.
  • [Developer]: Update to stable releases of node and yarn.
  • [Administration]: Disabled automated SISTR results from saving to sample metadata. Also disabled retrospective results from being added during the database update. Installations that have already performed the 0.20.0 update will have their retrospective automated SISTR results automatically added to sample metadata. Installations that jump directly to 0.20.1 and above will not have this data added to sample metadata. (0.20.1)
  • [UI/Workflow]: Preview analysis output files in a tabular or plain-text view in the analysis details page under the Preview tab.