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22 Open 9 Closed
22 Open 9 Closed
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Issues list

cli: make phylogeny a new sub-command enhancement New feature or request
#45 opened Jan 3, 2024 by ktmeaton
phylogeny: add recombination flag to get_descendants and get_ancestors enhancement New feature or request
#40 opened Jan 2, 2024 by ktmeaton v0.3.0
@ktmeaton
recombination: search implement new get_ancestors get_descendants enhancement New feature or request minor
#33 opened Jan 2, 2024 by ktmeaton v0.3.0
@ktmeaton
validate: improve parent-child check bug Something isn't working enhancement New feature or request minor
#32 opened Jan 2, 2024 by ktmeaton v0.3.0
@ktmeaton
run: fix order of parents and knockout parsing bug Something isn't working patch
#31 opened Jan 2, 2024 by ktmeaton v0.3.0
@ktmeaton
benchmark: compilation flags for flamegraph enhancement New feature or request minor performance
#30 opened Jan 2, 2024 by ktmeaton v0.3.0
@ktmeaton
export: linelist operator on single result not vec enhancement New feature or request minor
#26 opened Jan 2, 2024 by ktmeaton v0.3.0
@ktmeaton
recombination: remove struct param Sequence enhancement New feature or request minor
#25 opened Jan 2, 2024 by ktmeaton v0.3.0
@ktmeaton
dependency: change from bio crate to noodles enhancement New feature or request minor
#24 opened Jan 2, 2024 by ktmeaton v0.3.0
1
@ktmeaton
Add recombinant to plot
#22 opened Jan 2, 2024 by ktmeaton
Document handling of IUPAC amiguity
#21 opened Dec 22, 2023 by ktmeaton
@ktmeaton
How does rebar handle IUPAC ambiguous characters?
#20 opened Dec 20, 2023 by ammaraziz
@ktmeaton
4
plot: combine different breakpoints in one plot
#19 opened Dec 14, 2023 by ktmeaton
Speed regression
#18 opened Dec 8, 2023 by ktmeaton
2
Algorithm Deep Dive: XJ
#17 opened Dec 8, 2023 by ktmeaton
Algorithm Deep Dive: XD
#16 opened Dec 8, 2023 by ktmeaton
2
Improve documentation about input alignment
#15 opened Dec 6, 2023 by ktmeaton
1
Consider genome VCF instead of barcodes table. enhancement New feature or request
#14 opened Dec 6, 2023 by ktmeaton
input: stream alignment and show progress bar enhancement New feature or request
#13 opened Dec 5, 2023 by ktmeaton v0.3.0
@ktmeaton
1
explore: Find unknown recombinants in dataset
#12 opened Dec 5, 2023 by ktmeaton
Error !!
#3 opened Jun 12, 2023 by wtchoga
2
Efficiency improvements
#1 opened Apr 24, 2023 by ktmeaton
4
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