Use Github actions for CI (#58)

* vbump

* new tagbot setup

* use github actions for CI

* gitignore

.github/workflows/TagBot.yml

@@ -4,6 +4,11 @@ on:
     types:
       - created
   workflow_dispatch:
+    inputs:
+      lookback:
+        default: 3
+permissions:
+  contents: write
 jobs:
   TagBot:
     if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
@@ -12,4 +17,4 @@ jobs:
       - uses: JuliaRegistries/TagBot@v1
         with:
           token: ${{ secrets.GITHUB_TOKEN }}
-          ssh: ${{ secrets.DOCUMENTER_KEY }}
+          ssh: ${{ secrets.DOCUMENTER_KEY }}

.github/workflows/ci.yml

@@ -0,0 +1,50 @@
+name: CI
+on:
+  pull_request:
+  push:
+    branches: [main]
+    tags: ['*']
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          - '1' # automatically expands to the latest stable 1.x release of Julia
+          - 'nightly'
+        os:
+          - ubuntu-latest
+        arch:
+          - x64
+        include:
+          - os: windows-latest
+            version: '1'
+            arch: x86
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: julia-actions/cache@v1
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
+        env:
+          JULIA_NUM_THREADS: 4
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v1
+        with:
+          file: lcov.info
+  docs:
+    name: Documentation
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: julia-actions/cache@v1
+      - uses: julia-actions/julia-buildpkg@latest
+      - uses: julia-actions/julia-docdeploy@latest
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}

.gitignore

@@ -1,3 +1,4 @@
 *.cov
 docs/build/
 docs/site/
+.DS_Store

docs/src/index.md

@@ -1,7 +1,7 @@
 # RLEVectors
-`RLEVectors` is an alternate implementation of the Rle type from
+`RLEVectors` is an alternate implementation of the `Rle` type from
 Bioconductor's IRanges package by H. Pages, P. Aboyoun and
-M. Lawrence. RLEVectors represent a vector with repeated values as the
+M. Lawrence. `RLEVectors` represent a vector with repeated values as the
 ordered set of values and repeat extents. In the field of genomics,
 data of various types are  measured across the ~3 billion letters in
 the human genome can often be represented in a few thousand runs. It