Deploy command started to install less packages

[byymster]

Last pnpm version that worked:

8.6.10

pnpm version:

8.6.11 8.6.12

Code to reproduce the issue:

Create a workspace with a few services (each has it's own package json)
Install some packages(that is used everywhere) in the root of the workspace
run pnpm install && pnpm --filter=@services/someservice deploy --prod pruned
inspect the number of packages in the pruned/node_modules

Expected behavior:

Packages from service and root package.json of the workspace are installed (exists in pruned/node_modules)

Actual behavior:

Only packages from service are installed

Additional information:

• node -v prints: v20.5.1
• Windows, macOS, or Linux?: macOS Sonoma

[await-ovo]

Not sure if it is related to #6859.

I tried it with pnpm v8.6.10 and don't see the dependencies of root workspace project appearing in pruned/node_modules.

I don't know if I'm misunderstanding something, if so, please let me know, thanks!