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* addresses #4397

* addresses #4396

* addresses #4395
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@manulera
manulera authored Jul 28, 2023
1 parent 60eee13 commit 187b209
Showing 1 changed file with 51 additions and 8 deletions.
59 changes: 51 additions & 8 deletions src/ontology/fypo-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -8693,6 +8693,10 @@ Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009107>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009108>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009109>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009110>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009111>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009112>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009113>))
Declaration(Class(<http://purl.obolibrary.org/obo/FYPO_0009114>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0000001>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0000002>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0000022>))
Expand Down Expand Up @@ -130674,15 +130678,15 @@ SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008107> <http://purl.obolibrary
# Class: <http://purl.obolibrary.org/obo/FYPO_0008109> (abolished U6 2'-O-snRNA methylation at residue A64)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37403782") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008109> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which posttranscriptional addition of a methyl group to the 2'-oxygen atom of the adenine residue at position 64 in an U6 snRNA molecule is abolished.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008109> "vw"^^xsd:string)
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008109> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008109> "2023-07-11T12:16:24Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008109> "abolished U6 2'-O-snRNA methylation at residue A64"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008109> <http://purl.obolibrary.org/obo/FYPO_0003621>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008110> (decreased U6 2'-O-snRNA methylation at residue A64)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37403782") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008110> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which posttranscriptional addition of a methyl group to the 2'-oxygen atom of the adenine residue at position 64 in an U6 snRNA molecule is decreased.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008110> "vw"^^xsd:string)
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008110> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008110> "2023-07-11T12:20:26Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008110> "decreased U6 2'-O-snRNA methylation at residue A64"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008110> <http://purl.obolibrary.org/obo/FYPO_0000372>)
Expand All @@ -130691,39 +130695,39 @@ SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008110> <http://purl.obolibrary
# Class: <http://purl.obolibrary.org/obo/FYPO_0008111> (abnormal snRNA modification)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37403782") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008111> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which snRNA modification is abnormal. All snRNA modification may be abnormal, or one or more specific snRNA modifications may be selectively affected.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008111> "vw"^^xsd:string)
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008111> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008111> "2023-07-11T12:26:19Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008111> "abnormal snRNA modification"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008111> <http://purl.obolibrary.org/obo/FYPO_0000370>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008112> (abnormal U6 snRNP assembly)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37403782") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008112> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which any process of U6 snRNP complex assembly is abnormal.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008112> "vw"^^xsd:string)
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008112> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008112> "2023-07-11T12:31:29Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008112> "abnormal U6 snRNP assembly"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008112> <http://purl.obolibrary.org/obo/FYPO_0003628>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008113> (increased intron retention)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37403782") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008113> "A cellular process phenotype observed in the vegetative growth phase of the life cycle in which introns are retained at some, but not all introns at a higher level with increased frequency. Weak donor sequences are more affected.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008113> "vw"^^xsd:string)
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008113> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008113> "2023-07-11T12:34:21Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008113> "increased intron retention"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008113> <http://purl.obolibrary.org/obo/FYPO_0003244>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008114> (sensitive to amiloride)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15537393") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008114> "A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to amiloride. Cells stop growing (and may die) at a concentration of amiloride that allows wild type cells to grow.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008114> "vw"^^xsd:string)
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008114> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008114> "2023-07-11T12:43:36Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008114> "sensitive to amiloride"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008114> <http://purl.obolibrary.org/obo/FYPO_0000127>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0008115> (increased cell population growth on sorbitol carbon source)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:15537393") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008115> "A vegetative cell population growth phenotype in which cell growth is increased relative to normal in a medium containing sorbitol as the carbon source.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008115> "vw"^^xsd:string)
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008115> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008115> "2023-07-11T13:07:58Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasOBONamespace <http://purl.obolibrary.org/obo/FYPO_0008115> "fission_yeast_phenotype")
AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/FYPO_0008115> "Note that cell growth terms refer to growth under aerobic conditions unless stated otherwise.")
Expand All @@ -130733,7 +130737,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0008115> <http://purl.obolibrary
# Class: <http://purl.obolibrary.org/obo/FYPO_0008116> (decreased phosphoglycerate mutase activity)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:11106417") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0008116> "A molecular function phenotype in which the observed rate of a phosphoglycerate mutase activity is decreased.")
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008116> "vw"^^xsd:string)
AnnotationAssertion(oboInOwl:created_by <http://purl.obolibrary.org/obo/FYPO_0008116> "vw")
AnnotationAssertion(oboInOwl:creation_dat <http://purl.obolibrary.org/obo/FYPO_0008116> "2023-07-11T13:25:54Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0008116> "decreased phosphoglycerate mutase activity"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0008116> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0000911> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0004619>))))
Expand Down Expand Up @@ -132162,6 +132166,45 @@ AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYP
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0009110> "normal vegetative cell population growth after short incubation in hydroxyurea"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0009110> <http://purl.obolibrary.org/obo/FYPO_0001357>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0009111> (increased flocculation during vegetative growth)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35924983") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0009111> "A vegetative cell population phenotype that reflects increased occurrence of flocculation. Flocculation is the non-sexual aggregation of single cells.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/FYPO_0009111> "PomBase:mlr")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/FYPO_0009111> "2023-07-28T07:40:58Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0009111> "increased flocculation during vegetative growth"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0009111> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0002051> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0000128>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002314> <http://purl.obolibrary.org/obo/GO_0072690>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0009111> <http://purl.obolibrary.org/obo/FYPO_0000155>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0009112> (abolished flocculation during vegetative growth)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35924983") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0009112> "A cell adhesion phenotype observed in the vegetative growth phase of the life cycle in which flocculation does not occur in conditions where wild-type cells floculate. Flocculation is the non-sexual aggregation of cells.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/FYPO_0009112> "PomBase:mlr")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/FYPO_0009112> "2023-07-28T07:46:49Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0009112> "abolished flocculation during vegetative growth"@en)
EquivalentClasses(<http://purl.obolibrary.org/obo/FYPO_0009112> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> ObjectIntersectionOf(<http://purl.obolibrary.org/obo/PATO_0001558> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/GOREL_0000002> <http://purl.obolibrary.org/obo/GO_0072690>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0000052> <http://purl.obolibrary.org/obo/GO_0000128>) ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002573> <http://purl.obolibrary.org/obo/PATO_0000460>))))
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0009112> <http://purl.obolibrary.org/obo/FYPO_0000009>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0009113> (abolished protein localization to mitotic spindle polar microtubules during anaphase B)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34080538") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0009113> "A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle polar microtubules during anaphase B does not occur.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/FYPO_0009113> "PomBase:mlr")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/FYPO_0009113> "2023-07-28T08:09:39Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0009113> "abolished protein localisation to interpolar microtubules during mitotic anaphase B")
AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0009113> "abolished protein localisation to mitotic spindle polar microtubules during anaphase B")
AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0009113> "abolished protein localization to interpolar microtubules during mitotic anaphase B")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0009113> "abolished protein localization to mitotic spindle polar microtubules during anaphase B"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0009113> <http://purl.obolibrary.org/obo/FYPO_0004754>)

# Class: <http://purl.obolibrary.org/obo/FYPO_0009114> (transient monopolar mitotic spindle)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:25057016") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/FYPO_0009114> "A physical cellular phenotype in which the mitotic spindle remains monopolar when formed, with microtubules emanating from only one pole, for longer than wild-type, but eventually reaches bipolarity.")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/creator> <http://purl.obolibrary.org/obo/FYPO_0009114> "PomBase:mlr")
AnnotationAssertion(<http://purl.org/dc/elements/1.1/date> <http://purl.obolibrary.org/obo/FYPO_0009114> "2023-07-28T08:20:20Z"^^xsd:dateTime)
AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0009114> "monopolar mitotic spindle that eventually reaches bipolarity")
AnnotationAssertion(oboInOwl:hasExactSynonym <http://purl.obolibrary.org/obo/FYPO_0009114> "temporary monopolar mitotic spindle")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/FYPO_0009114> "transient monopolar mitotic spindle"@en)
SubClassOf(<http://purl.obolibrary.org/obo/FYPO_0009114> <http://purl.obolibrary.org/obo/FYPO_0000276>)


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# Named Individuals
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